Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007490.1 Corchorus capsularis cultivar CVL-1 contig07511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34707

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
475--519
13
3.5
13
90
3
74
22
13
8
55
1.65
7617--7661
13
3.5
13
90
3
74
22
13
8
55
1.65
7658--7689
6
5.5
6
96
3
57
28
0
15
56
1.40
15088--15189
30
3.5
31
65
18
83
42
24
12
20
1.87
15061--15189
57
2.3
56
84
6
170
42
24
13
20
1.87
16119--16208
16
5.6
16
75
0
81
47
34
12
5
1.64
16118--16208
32
2.8
32
86
0
137
48
34
12
5
1.63
16363--16423
15
3.9
16
83
10
81
39
37
6
16
1.75
16346--16428
32
2.6
32
94
0
139
39
38
8
13
1.75
23329--23362
16
2.2
15
94
5
59
50
29
0
20
1.49
28112--28240
57
2.3
56
90
1
195
41
27
12
18
1.86
28113--28210
26
3.6
26
69
24
76
40
27
12
19
1.87
28172--28357
101
1.9
97
84
6
248
39
26
14
19
1.90
29667--29884
32
6.3
35
79
10
182
28
19
8
43
1.80
29636--29791
73
2.1
74
96
1
287
23
16
8
51
1.71
29680--29895
73
3.1
72
78
14
204
27
20
9
42
1.82
29761--29900
32
4.2
32
89
5
192
30
20
9
39
1.84
29893--30067
37
4.9
37
81
6
225
24
26
6
42
1.79
29893--30062
69
2.4
71
91
4
272
24
27
7
41
1.81
29926--30033
32
3.2
32
76
12
126
22
29
7
40
1.81
30147--30413
76
3.5
76
93
0
444
22
20
12
44
1.85
30076--30407
36
8.9
35
70
16
195
23
19
12
44
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30476--30601
40
3.4
40
66
26
121
21
21
10
46
1.80
30374--30620
71
3.4
71
91
7
383
23
21
10
44
1.84

Tables:   1

The End!