Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007495.1 Corchorus capsularis cultivar CVL-1 contig07516, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18747

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1732--1780
24
2.0
24
96
0
89
48
24
14
12
1.77
3145--3356
41
5.2
40
87
1
280
48
13
14
24
1.79
3145--3393
82
3.1
81
84
5
292
46
12
15
25
1.80
3310--3463
37
4.2
36
83
7
188
45
9
18
26
1.80
3412--3930
41
12.9
41
90
3
770
45
11
21
21
1.83
3447--3918
244
1.9
245
94
1
831
44
11
22
21
1.84
3937--4052
36
3.3
35
80
7
119
50
11
15
23
1.76
4043--4251
32
6.2
33
73
11
158
43
8
19
29
1.80
4056--4272
36
6.3
35
78
12
184
42
8
19
29
1.81
4061--4251
68
2.8
66
85
7
233
40
9
19
30
1.83
6507--6541
18
1.9
18
88
0
52
14
8
42
34
1.76
6617--6656
15
2.5
17
84
12
57
50
0
0
50
1.00
6824--6886
29
2.1
30
91
8
103
38
17
15
28
1.91
6854--7014
39
4.2
38
87
4
216
36
16
16
31
1.91
7652--7703
21
2.4
22
80
6
61
50
21
11
17
1.77

Tables:   1

The End!