Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007497.1 Corchorus capsularis cultivar CVL-1 contig07518, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85510
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:1181 original size:24 final size:27
Alignment explanation
Indices: 1154--1206 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 27
1144 TTCTAGTGAT
*
1154 GAGAAT-AAG-GAAGGAAAA-GAGGAG
1 GAGAATCAAGAGAAGGAAAATAAGGAG
1178 GAGAATCAAGAGAAGGAAAATAAGGAG
1 GAGAATCAAGAGAAGGAAAATAAGGAG
1205 GA
1 GA
1207 ATTTCATCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 6 0.24
25 3 0.12
26 9 0.36
27 7 0.28
ACGTcount: A:0.55, C:0.02, G:0.38, T:0.06
Consensus pattern (27 bp):
GAGAATCAAGAGAAGGAAAATAAGGAG
Found at i:1781 original size:14 final size:14
Alignment explanation
Indices: 1762--1788 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1752 TTTTCCCCAA
1762 ATTTTTTGAAAAAG
1 ATTTTTTGAAAAAG
1776 ATTTTTTGAAAAA
1 ATTTTTTGAAAAA
1789 ATTGATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
ATTTTTTGAAAAAG
Found at i:2990 original size:19 final size:18
Alignment explanation
Indices: 2966--3001 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
2956 TGAAGATTTC
2966 TTGAAGATAATTTGAAGAT
1 TTGAAGATAA-TTGAAGAT
*
2985 TTGAAGATCATTGAAGA
1 TTGAAGATAATTGAAGA
3002 ATTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGAAGATAATTGAAGAT
Found at i:11094 original size:41 final size:41
Alignment explanation
Indices: 11032--11119 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
11022 CAATTTATTG
* * *
11032 AACTGTTGAAGATAAAGAACTTCATACAACACAAGCTAAAA
1 AACTATTGAAGATAAAGAACTTCACACAACACAAGCCAAAA
* * *
11073 CACTATTGAAGATGAAGAACTTCACACTACACAAGCCAAAA
1 AACTATTGAAGATAAAGAACTTCACACAACACAAGCCAAAA
11114 AACTAT
1 AACTAT
11120 GTCCAAGCAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.49, C:0.20, G:0.11, T:0.19
Consensus pattern (41 bp):
AACTATTGAAGATAAAGAACTTCACACAACACAAGCCAAAA
Found at i:20032 original size:32 final size:31
Alignment explanation
Indices: 19985--20069 Score: 107
Period size: 32 Copynumber: 2.7 Consensus size: 31
19975 ATCTGGCTAA
* *
19985 AACCCAAACTGAACCCGAACCTGAATTAACCT
1 AACCCAAATTCAACCCGAACC-GAATTAACCT
* * *
20017 GACCCAAATTTAACCCGAATCCGAATTGACCT
1 AACCCAAATTCAACCCGAA-CCGAATTAACCT
20049 AACCCAAATTCAACCCGAACC
1 AACCCAAATTCAACCCGAACC
20070 CAACTTAAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
31 2 0.04
32 42 0.91
33 2 0.04
ACGTcount: A:0.39, C:0.35, G:0.09, T:0.16
Consensus pattern (31 bp):
AACCCAAATTCAACCCGAACCGAATTAACCT
Found at i:20071 original size:17 final size:16
Alignment explanation
Indices: 19985--20104 Score: 82
Period size: 17 Copynumber: 7.3 Consensus size: 16
19975 ATCTGGCTAA
*
19985 AACCCAAACTGAACCCG
1 AACCCAAA-TTAACCCG
** *
20002 AACCTGAATTAACCTG
1 AACCCAAATTAACCCG
20018 -ACCCAAATTTAACCCG
1 AACCCAAA-TTAACCCG
* * * *
20034 AATCCGAATTGA-CCT
1 AACCCAAATTAACCCG
20049 AACCCAAATTCAACCCG
1 AACCCAAATT-AACCCG
*
20066 AACCCAACTTAAACCCG
1 AACCCAAATT-AACCCG
* *
20083 AACCCGAAAATAATCCG
1 AACCC-AAATTAACCCG
20100 AACCC
1 AACCC
20105 GAACCCAACC
Statistics
Matches: 78, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
15 15 0.19
16 17 0.22
17 43 0.55
18 3 0.04
ACGTcount: A:0.40, C:0.36, G:0.09, T:0.15
Consensus pattern (16 bp):
AACCCAAATTAACCCG
Found at i:27099 original size:37 final size:38
Alignment explanation
Indices: 27021--27099 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
27011 ATAATTACCC
* **
27021 ATTTAATTTTGCCTTTTGTCTTTGTTTCCAATCGTTGT
1 ATTTAATTTTGCCTTTTGTCTTTGTCTCCAATCGTCCT
*
27059 ATTTAATTTTGCTTTTTGTCTTTGTCTCCAA-CGTCCT
1 ATTTAATTTTGCCTTTTGTCTTTGTCTCCAATCGTCCT
27096 ATTT
1 ATTT
27100 GGGCTTAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 8 0.22
38 29 0.78
ACGTcount: A:0.14, C:0.18, G:0.11, T:0.57
Consensus pattern (38 bp):
ATTTAATTTTGCCTTTTGTCTTTGTCTCCAATCGTCCT
Found at i:28354 original size:22 final size:22
Alignment explanation
Indices: 28329--28431 Score: 61
Period size: 22 Copynumber: 4.7 Consensus size: 22
28319 TTCCTTAGAG
28329 AGGTTAATAAAATTTCATAAGA
1 AGGTTAATAAAATTTCATAAGA
* * *
28351 AGGTTAAAAAAAATT-ATAAAA
1 AGGTTAATAAAATTTCATAAGA
* * *
28372 AGATT-TTCGAAATTTCAT-AGTA
1 AGGTTAAT-AAAATTTCATAAG-A
** * *
28394 TCGTTATTAAAATTTCATAGGA
1 AGGTTAATAAAATTTCATAAGA
28416 AGGTT-ATCAAAATTTC
1 AGGTTAAT-AAAATTTC
28432 GTAATGGGAT
Statistics
Matches: 58, Mismatches: 17, Indels: 12
0.67 0.20 0.14
Matches are distributed among these distances:
21 16 0.28
22 39 0.67
23 3 0.05
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.35
Consensus pattern (22 bp):
AGGTTAATAAAATTTCATAAGA
Found at i:28561 original size:2 final size:2
Alignment explanation
Indices: 28554--28579 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
28544 ACTAAAACTA
28554 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
28580 TAATATGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37308 original size:21 final size:21
Alignment explanation
Indices: 37279--37318 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
37269 ATAAAATAAC
*
37279 ATATTATAAATATTTTTTAGA
1 ATATAATAAATATTTTTTAGA
*
37300 ATATAATAATTATTTTTTA
1 ATATAATAAATATTTTTTA
37319 TATAAGGGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (21 bp):
ATATAATAAATATTTTTTAGA
Found at i:37876 original size:32 final size:31
Alignment explanation
Indices: 37810--37878 Score: 93
Period size: 32 Copynumber: 2.2 Consensus size: 31
37800 GTAGTACTCA
**
37810 GCTCGACTCTAAAATAAAGTCTCGAAAGTCG
1 GCTCGACTCTAAAATAAAAACTCGAAAGTCG
* *
37841 GCTCGACTCTAAAATAGAAAACTCGAAGGTTG
1 GCTCGACTCTAAAATA-AAAACTCGAAAGTCG
37873 GCTCGA
1 GCTCGA
37879 GTTCCACTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 16 0.48
32 17 0.52
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (31 bp):
GCTCGACTCTAAAATAAAAACTCGAAAGTCG
Found at i:38143 original size:129 final size:129
Alignment explanation
Indices: 37908--38166 Score: 338
Period size: 129 Copynumber: 2.0 Consensus size: 129
37898 TGGAGGCTTG
* * **
37908 AGCTTGAGCTTAAACAAACTGTTCGATTAAGCTAGTCTTTCGATCTTTTGAAAAGCAGACGAACA
1 AGCTCGAGCTTAAACAAACTGTTCGATTAAGCTAGTCTTTCGATATCCTGAAAAGCAGACGAACA
* *** * * *
37973 CATGTCTTCATTCCATATAACCAAACTTAAGTTAACTTTAATTTACCCTAAAATTCGTTATGCT
66 AAAACCTTCATTCCAGATAACCAAACTTAAGTTAACTTTAATTTACCATAAAACTCGTTATGCT
* * * * *
38037 AGCTCGAGCTTAAACGAACTGTTTGATTAAGCTTGTCTTTCGATATCCTGAAGAGCATACGAACA
1 AGCTCGAGCTTAAACAAACTGTTCGATTAAGCTAGTCTTTCGATATCCTGAAAAGCAGACGAACA
* * * *
38102 AAAACCTTCATTCTAGATAACCAAGCTTAAGTTAACTTTAATTTGCCATAGAACTCGTTATGCT
66 AAAACCTTCATTCCAGATAACCAAACTTAAGTTAACTTTAATTTACCATAAAACTCGTTATGCT
38166 A
1 A
38167 AAAACAAAAA
Statistics
Matches: 110, Mismatches: 20, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
129 110 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (129 bp):
AGCTCGAGCTTAAACAAACTGTTCGATTAAGCTAGTCTTTCGATATCCTGAAAAGCAGACGAACA
AAAACCTTCATTCCAGATAACCAAACTTAAGTTAACTTTAATTTACCATAAAACTCGTTATGCT
Found at i:45764 original size:132 final size:132
Alignment explanation
Indices: 45544--45807 Score: 415
Period size: 131 Copynumber: 2.0 Consensus size: 132
45534 AAGAATTATT
* * *
45544 TTTAAAAATTCTAATATATGTAAGTTTTTTAATTAAATTAGTAAAATGGTAAAAATAAAATAAAA
1 TTTAAAAATTATAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAAT---ATAAAA
* *
45609 TAGGTATAAGGATATTAGATTTAATTAAATAAAAAATAGAGTTTTTAGTTGAGTAAAACTATAAA
63 TAGGTATAAGGATATTAGATTTAATTAAAT-AAAAATAGAGTTTTTAATTGACTAAAACTATAAA
45674 AGTATA
127 AGTATA
45680 TTTAAAAATTATAATATATATAAGTTTTTTTAATTAAAATAGTAAAATGGTAAAAAT-T-AAATA
1 TTTAAAAATTATAATATATATAAG-TTTTTTAATTAAAATAGTAAAATGGTAAAAATATAAAATA
*
45743 GTTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAATTGACTAAAACTATAAAAGT
65 GGTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAATTGACTAAAACTATAAAAGT
45808 TTAAACAATG
Statistics
Matches: 121, Mismatches: 6, Indels: 7
0.90 0.04 0.05
Matches are distributed among these distances:
131 35 0.29
132 32 0.26
133 1 0.01
136 22 0.18
137 31 0.26
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (132 bp):
TTTAAAAATTATAATATATATAAGTTTTTTAATTAAAATAGTAAAATGGTAAAAATATAAAATAG
GTATAAGGATATTAGATTTAATTAAATAAAAATAGAGTTTTTAATTGACTAAAACTATAAAAGTA
TA
Found at i:55648 original size:20 final size:20
Alignment explanation
Indices: 55625--55706 Score: 55
Period size: 20 Copynumber: 4.2 Consensus size: 20
55615 ATTGCTGTGA
55625 TTGATTGCCTATTCCTTGAT
1 TTGATTGCCTATTCCTTGAT
* * *
55645 TTGAAT---TATTGCATTGCT
1 TTGATTGCCTATT-CCTTGAT
** **
55663 TTGATTGATTATTGTTGTGA-
1 TTGATTGCCTATTCCT-TGAT
55683 TTGATTGCCTATTCCTTGAT
1 TTGATTGCCTATTCCTTGAT
55703 TTGA
1 TTGA
55707 ATTATTGCAT
Statistics
Matches: 45, Mismatches: 11, Indels: 12
0.66 0.16 0.18
Matches are distributed among these distances:
17 4 0.09
18 10 0.22
19 3 0.07
20 22 0.49
21 6 0.13
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.51
Consensus pattern (20 bp):
TTGATTGCCTATTCCTTGAT
Found at i:55688 original size:58 final size:58
Alignment explanation
Indices: 55598--55719 Score: 226
Period size: 58 Copynumber: 2.1 Consensus size: 58
55588 CTTTTTCTTA
*
55598 CATTGCTTTTATTGATTATTGCTGTGATTGATTGCCTATTCCTTGATTTGAATTATTG
1 CATTGCTTTGATTGATTATTGCTGTGATTGATTGCCTATTCCTTGATTTGAATTATTG
*
55656 CATTGCTTTGATTGATTATTGTTGTGATTGATTGCCTATTCCTTGATTTGAATTATTG
1 CATTGCTTTGATTGATTATTGCTGTGATTGATTGCCTATTCCTTGATTTGAATTATTG
55714 CATTGC
1 CATTGC
55720 ATTTTTCATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.19, C:0.12, G:0.18, T:0.51
Consensus pattern (58 bp):
CATTGCTTTGATTGATTATTGCTGTGATTGATTGCCTATTCCTTGATTTGAATTATTG
Found at i:60895 original size:28 final size:28
Alignment explanation
Indices: 60855--60911 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
60845 TTCGTATCCC
*
60855 TTTGGAGATTTCAATCAATTATTTATGG
1 TTTGGAGATTTCAATCAATTAATTATGG
60883 TTTGGAGATTTCAATCAATTAATTATGG
1 TTTGGAGATTTCAATCAATTAATTATGG
60911 T
1 T
60912 GAGATTTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.18, T:0.46
Consensus pattern (28 bp):
TTTGGAGATTTCAATCAATTAATTATGG
Found at i:62702 original size:21 final size:19
Alignment explanation
Indices: 62676--62714 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
62666 ACCACATCTA
*
62676 TTCCAAACACTCTCCAAACTT
1 TTCC-AACAC-CTCAAAACTT
62697 TTCCAACACCTCAAAACT
1 TTCCAACACCTCAAAACT
62715 CAAACACTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 5 0.29
21 4 0.24
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.26
Consensus pattern (19 bp):
TTCCAACACCTCAAAACTT
Found at i:63526 original size:14 final size:14
Alignment explanation
Indices: 63509--63535 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
63499 TGGGGTGGGG
63509 GGGGGGGGGGGGAA
1 GGGGGGGGGGGGAA
63523 GGGGGGGGGGGGA
1 GGGGGGGGGGGGA
63536 GATGAGTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.11, C:0.00, G:0.89, T:0.00
Consensus pattern (14 bp):
GGGGGGGGGGGGAA
Found at i:69954 original size:26 final size:27
Alignment explanation
Indices: 69916--69974 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
69906 CAGGACGTCA
*
69916 CCCTCTGGCATGGGAGACGG-AAATTT
1 CCCTTTGGCATGGGAGACGGAAAATTT
* * *
69942 CCCTTTGGTATGGGTGATGGAAAATTT
1 CCCTTTGGCATGGGAGACGGAAAATTT
69969 CTCCTT
1 C-CCTT
69975 CTGCCTTGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.59
27 7 0.26
28 4 0.15
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.32
Consensus pattern (27 bp):
CCCTTTGGCATGGGAGACGGAAAATTT
Found at i:75606 original size:111 final size:109
Alignment explanation
Indices: 75472--75684 Score: 318
Period size: 111 Copynumber: 1.9 Consensus size: 109
75462 GTTGATGGCA
* *
75472 CATTTTTTTTGTTGATAACTAATTTGGTATATCCTTTAAACAACATTCTGCTATCATGTATGTAA
1 CATTCTTTTTGTTGATAACTAATTTGGTATATCCTTTAAACAACATTCTGCTATCACG--TGTAA
* *
75537 AGCAGTGTAAAAGGTTACCGATTTAGTACTTAGCTTAATCTTTAGC
64 AGCAGTGTAAAAGGTTACCGACTTAATACTTAGCTTAATCTTTAGC
* *
75583 CATTCTTTTTGTTGATAACTAATTTGGTATATCCTTTAAACTATATTCTGCTATCACGTGTAAAG
1 CATTCTTTTTGTTGATAACTAATTTGGTATATCCTTTAAACAACATTCTGCTATCACGTGTAAAG
* * * *
75648 TAGTGTAAAGGGTTACCTACTTAATACTTAGGTTAAT
66 CAGTGTAAAAGGTTACCGACTTAATACTTAGCTTAAT
75685 GTTTTTAAGC
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 38 0.41
111 54 0.59
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.42
Consensus pattern (109 bp):
CATTCTTTTTGTTGATAACTAATTTGGTATATCCTTTAAACAACATTCTGCTATCACGTGTAAAG
CAGTGTAAAAGGTTACCGACTTAATACTTAGCTTAATCTTTAGC
Found at i:79889 original size:21 final size:20
Alignment explanation
Indices: 79863--79902 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
79853 GATTTTCTTT
*
79863 CTCTTTCCTCTTCCCGAAAAA
1 CTCTTT-CTCTTCCCCAAAAA
*
79884 CTCTTTTTCTTCCCCAAAA
1 CTCTTTCTCTTCCCCAAAA
79903 TTCTTCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.38, G:0.03, T:0.38
Consensus pattern (20 bp):
CTCTTTCTCTTCCCCAAAAA
Found at i:84921 original size:33 final size:32
Alignment explanation
Indices: 84870--84974 Score: 97
Period size: 33 Copynumber: 3.2 Consensus size: 32
84860 TTGCAAAGAG
*
84870 TGTTTT-AGATGTTGTTTGCGATGATACTAATCC
1 TGTTTTAAG-TGTTGTTTGCGATGAAACTAAT-C
* * *
84903 T-TATTTGAGTGTTGTTTGCAATGACACTAAATC
1 TGT-TTTAAGTGTTGTTTGCGATGAAACT-AATC
* *
84936 TGTTTTAAGTGTTGTTTGTGATGAAACTAAATT
1 TGTTTTAAGTGTTGTTTGCGATGAAACT-AATC
84969 TGTTTT
1 TGTTTT
84975 GGATGCTAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
32 1 0.02
33 54 0.89
34 6 0.10
ACGTcount: A:0.24, C:0.09, G:0.20, T:0.48
Consensus pattern (32 bp):
TGTTTTAAGTGTTGTTTGCGATGAAACTAATC
Found at i:85041 original size:33 final size:33
Alignment explanation
Indices: 85004--85108 Score: 174
Period size: 33 Copynumber: 3.2 Consensus size: 33
84994 AACAAATCTA
*
85004 TTTTGATTGATCATAGCATTGCAAATAATTCTG
1 TTTTGGTTGATCATAGCATTGCAAATAATTCTG
*
85037 TTTTGGTTGATCATAGCATTGCAAATAATTCTA
1 TTTTGGTTGATCATAGCATTGCAAATAATTCTG
* *
85070 TTTTGGTTGATCATAACATTGAAAATAATTCTG
1 TTTTGGTTGATCATAGCATTGCAAATAATTCTG
85103 TTTTGG
1 TTTTGG
85109 GTGAAAAGAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (33 bp):
TTTTGGTTGATCATAGCATTGCAAATAATTCTG
Done.