Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007498.1 Corchorus capsularis cultivar CVL-1 contig07519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23695

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
191--354
82
2.0
82
88
4
242
27
15
25
32
1.95
1704--1749
21
2.1
21
84
4
56
39
21
8
30
1.84
5223--5265
22
2.0
22
90
0
68
44
16
27
11
1.82
5482--5542
15
4.3
14
78
15
63
57
0
8
34
1.29
5603--5734
67
2.0
67
98
0
255
20
22
18
37
1.94
7714--7749
12
2.9
12
87
4
54
5
69
11
13
1.34
7960--8006
20
2.5
18
86
6
67
40
0
6
53
1.27
8078--8111
2
18.0
2
88
11
54
50
0
0
50
1.00
16031--16261
79
2.9
79
90
0
347
30
24
16
28
1.97
16265--16473
83
2.5
83
95
1
366
21
31
14
32
1.94
16796--17462
42
15.9
42
82
5
771
23
33
15
27
1.95
16829--17462
162
3.8
161
82
9
695
23
33
15
27
1.95
16836--17462
246
2.5
248
87
3
861
24
32
15
27
1.95
17524--17692
60
2.8
60
98
0
320
18
26
21
33
1.96
19841--19941
46
2.2
47
85
1
141
50
21
9
17
1.75
20954--21008
26
2.1
27
86
10
78
61
10
3
23
1.44

Tables:   1

The End!