Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007499.1 Corchorus capsularis cultivar CVL-1 contig07520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47314

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
334--380
16
3.1
15
82
11
53
59
17
10
12
1.60
1777--1822
20
2.3
20
88
0
65
17
13
32
36
1.88
2377--2752
92
4.1
92
96
0
673
19
9
20
50
1.75
10093--10119
2
13.5
2
100
0
54
51
0
0
48
1.00
19744--19805
32
2.0
32
90
3
99
32
25
22
19
1.97
23375--24019
335
1.9
335
92
0
1094
30
14
15
39
1.87
33601--33630
12
2.5
12
94
0
51
26
0
36
36
1.57
40943--41002
21
2.7
21
78
12
66
71
1
26
0
0.95
40936--40996
26
2.3
27
81
16
74
68
1
29
0
0.99
40954--41000
18
2.6
18
82
0
58
74
2
23
0
0.93
41221--41276
23
2.4
23
84
0
67
35
3
3
57
1.34
41896--41927
2
16.0
2
93
0
55
46
0
3
50
1.17
42493--42536
23
1.9
23
95
0
79
29
4
15
50
1.64
42886--43051
83
2.0
82
90
5
264
31
22
15
30
1.95
46688--46757
34
2.0
36
94
5
126
44
8
14
32
1.75
47271--47306
2
18.5
2
94
5
65
52
0
0
47
1.00

Tables:   1

The End!