Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007501.1 Corchorus capsularis cultivar CVL-1 contig07522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24708

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3713--3791
33
2.4
33
95
0
140
20
39
29
11
1.87
3713--3809
33
2.9
33
89
3
106
21
39
27
11
1.88
3766--3854
33
2.7
33
81
6
92
23
41
23
11
1.86
5157--5231
30
2.5
30
80
4
89
26
29
32
12
1.92
6744--6790
2
24.5
2
91
8
80
51
0
0
48
1.00
6744--6787
15
2.9
15
100
0
88
52
0
0
47
1.00
15858--15980
34
3.7
32
86
6
158
31
19
10
38
1.86
15858--15990
65
2.0
67
89
5
207
31
19
9
39
1.84
18542--18597
29
1.9
29
85
0
76
57
3
28
10
1.49
18600--18660
3
20.7
3
83
3
79
62
1
1
34
1.15
19032--19287
36
7.1
36
68
13
150
35
29
17
17
1.93
19032--19287
108
2.4
107
86
2
343
35
29
17
17
1.93
21242--21295
7
7.6
7
82
12
65
0
14
0
85
0.61
21241--21298
12
4.9
12
86
14
77
0
15
0
84
0.62
21541--21594
6
8.8
6
78
11
56
1
16
1
79
0.91
21541--21594
13
4.4
12
77
11
56
1
16
1
79
0.91
21542--21594
10
4.9
11
79
6
56
1
16
1
79
0.92
21540--21596
24
2.3
26
82
11
66
1
17
1
78
0.91
21918--21966
13
3.7
14
84
13
68
38
8
8
44
1.64
21912--21967
26
2.2
25
87
3
85
44
8
7
39
1.63
21912--21953
12
3.3
12
84
12
57
42
11
7
38
1.69
21918--21966
12
3.8
13
83
8
55
38
8
8
44
1.64

Tables:   1

The End!