Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007505.1 Corchorus capsularis cultivar CVL-1 contig07526, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5958
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26


Found at i:2628 original size:24 final size:24

Alignment explanation


    Indices: 2601--2646  Score: 83
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       2591 CCTTGGGCAC

                                    
       2601 TCATTTTAATGATGGTTATTTTGG
          1 TCATTTTAATGATGGTTATTTTGG

                             *    
       2625 TCATTTTAATGATGGTTTTTTT
          1 TCATTTTAATGATGGTTATTTT

       2647 TATTAGGACA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  24   21  1.00

ACGTcount: A:0.20, C:0.04, G:0.17, T:0.59


Consensus pattern (24 bp):   
TCATTTTAATGATGGTTATTTTGG

Found at i:3491 original size:27 final size:26

Alignment explanation


    Indices: 3451--3501  Score: 75
    Period size: 27  Copynumber: 1.9  Consensus size: 26

       3441 ACTTTGGTCA

                                       
       3451 TTTCAGGGACATTTCGGTCATCTTTCG
          1 TTTCAGGGACATTTCGGTCA-CTTTCG

                     *    *         
       3478 TTTCAGGGATATTTTGGTCACTTT
          1 TTTCAGGGACATTTCGGTCACTTT

       3502 TGGGGGTAAT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  26    4  0.18
  27   18  0.82

ACGTcount: A:0.16, C:0.18, G:0.22, T:0.45


Consensus pattern (26 bp):   
TTTCAGGGACATTTCGGTCACTTTCG
Done.