genome.fa.s7508.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007508.1 Corchorus capsularis cultivar CVL-1 contig07529, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29027

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4451--4596	60	2.4	60	84	0	184	34	17	18	30	1.94
4625--4823	31	6.5	31	74	15	157	26	19	19	35	1.95
4656--4819	60	2.7	59	89	3	240	26	19	18	34	1.95
7035--7066	2	16.0	2	100	0	64	50	0	0	50	1.00
7753--7790	6	6.8	6	82	17	55	84	0	0	15	0.63
14332--15008	37	18.4	37	87	2	871	45	8	20	25	1.79
14330--15005	332	2.0	331	86	1	944	45	8	20	25	1.79
15003--15210	41	5.2	41	88	7	311	47	12	19	20	1.81
15415--15448	12	2.8	12	90	0	59	32	26	23	17	1.97
15439--15501	30	2.1	30	93	0	108	22	41	26	9	1.84
16325--16424	36	2.8	36	78	7	96	51	12	11	26	1.72
16447--16938	37	13.3	37	91	0	754	40	7	26	25	1.83
16840--16983	37	4.2	32	85	11	130	40	9	22	27	1.85
16890--17114	36	6.3	35	79	14	194	39	9	22	28	1.86
16918--17106	36	5.3	36	84	8	208	38	10	23	28	1.87
16927--17106	73	2.5	72	82	6	208	38	9	23	28	1.86
26150--26206	22	2.5	22	80	2	60	70	0	19	10	1.16
26150--26206	23	2.5	21	81	13	60	70	0	19	10	1.16
27488--27611	24	4.9	24	75	13	106	29	20	4	45	1.69
27550--27612	8	7.9	8	81	0	72	30	17	3	49	1.62
27547--27612	16	4.1	16	82	0	87	28	18	3	50	1.62
27813--28070	14	19.0	14	65	24	90	29	21	5	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27828--27885	22	2.6	22	78	13	64	31	22	5	41	1.76
27814--28072	36	6.8	35	70	20	173	30	21	5	43	1.74
27941--27983	22	2.0	22	90	0	68	30	20	2	46	1.63
27978--28070	22	4.2	22	83	5	98	32	22	3	41	1.70

Tables:   1

The End!