Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007511.1 Corchorus capsularis cultivar CVL-1 contig07532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26182

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155--183
1
29.0
1
100
0
58
100
0
0
0
0.00
972--1007
19
1.9
18
88
5
54
41
2
22
33
1.68
2287--2320
16
2.2
16
89
5
52
29
2
8
58
1.43
2633--2701
30
2.3
30
100
0
138
14
15
31
37
1.88
4112--4146
18
1.9
18
94
0
61
17
28
11
42
1.83
6879--6912
17
2.0
17
88
0
50
47
2
0
50
1.16
19112--19139
2
14.0
2
100
0
56
50
0
0
50
1.00
19274--19306
17
1.9
17
93
0
57
36
15
0
48
1.45
19355--19576
108
2.1
104
87
6
313
46
8
9
35
1.67
20334--20392
31
1.9
31
89
0
91
44
3
18
33
1.67
20420--20450
2
15.5
2
93
0
53
48
0
3
48
1.17
22912--22995
41
2.0
42
95
2
152
46
7
3
42
1.48
24603--24964
134
2.6
135
83
7
426
43
9
10
36
1.71
25098--25169
36
2.0
36
100
0
144
58
8
5
27
1.50
25312--25637
138
2.4
136
90
5
507
43
9
9
37
1.70
25938--25969
2
16.0
2
100
0
64
50
0
0
50
1.00
25995--26052
30
1.9
30
89
6
91
37
3
12
46
1.58

Tables:   1

The End!