Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007515.1 Corchorus capsularis cultivar CVL-1 contig07536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19907

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
744--816
28
2.6
28
88
0
101
43
30
10
15
1.80
1053--1251
45
4.4
45
85
0
229
31
14
21
32
1.93
2662--2702
14
2.9
14
88
3
55
0
17
0
82
0.66
2668--2712
21
2.1
22
91
4
74
0
17
0
82
0.68
2668--2713
15
3.1
15
87
3
58
0
17
0
82
0.67
3965--4008
14
3.3
13
81
12
54
31
13
6
47
1.69
5132--5241
42
2.7
41
82
9
111
40
12
20
25
1.88
6693--6818
24
5.2
24
76
13
105
19
19
5
56
1.61
6693--6818
48
2.6
49
78
7
130
19
19
5
56
1.61
6732--6812
25
3.2
25
87
3
110
19
18
6
55
1.63
6693--6818
25
5.2
23
78
10
101
19
19
5
56
1.61
6806--7506
36
18.9
36
76
12
557
20
22
2
53
1.58
6963--7002
14
2.9
14
85
7
55
20
22
2
55
1.56
7040--7489
7
62.3
7
70
11
216
19
24
2
54
1.58
6873--7085
77
2.8
77
92
3
358
20
22
2
54
1.56
7078--7474
220
1.8
220
95
0
722
19
23
3
53
1.59
7456--7506
22
2.3
22
82
0
66
17
23
0
58
1.38
9087--9120
13
2.6
13
95
0
59
23
8
8
58
1.56
9117--9147
6
5.2
6
92
0
53
29
0
19
51
1.47
16629--16662
13
2.6
13
95
0
59
23
8
8
58
1.56

Tables:   1

The End!