Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007516.1 Corchorus capsularis cultivar CVL-1 contig07537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52225

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1284--1326
10
4.2
10
77
16
52
44
2
0
53
1.13
3265--3347
37
2.2
37
91
0
139
16
22
9
50
1.74
3267--3359
37
2.5
37
86
6
134
16
20
9
53
1.70
4106--4189
31
2.7
31
81
1
107
40
11
16
30
1.85
4345--4424
29
2.7
30
80
7
83
26
17
13
42
1.86
11181--11256
16
4.8
16
68
3
55
9
10
36
43
1.71
11196--11255
31
1.9
31
89
0
93
8
8
38
45
1.65
15159--15191
2
16.5
2
100
0
66
48
0
0
51
1.00
18698--18726
2
14.5
2
100
0
58
51
48
0
0
1.00
21998--22048
27
2.0
26
92
7
86
27
21
15
35
1.94
23874--23964
25
3.5
26
92
4
148
62
2
0
35
1.07
23871--23964
3
29.3
3
90
6
125
62
2
0
35
1.07
36833--36857
13
1.9
13
100
0
50
32
16
20
32
1.94
40300--40366
30
2.2
31
89
2
100
49
8
16
25
1.74
40308--40367
30
2.0
30
93
3
102
48
6
16
28
1.71
40361--40420
22
2.7
23
87
5
72
50
8
23
18
1.74
40404--40608
107
1.9
109
93
2
360
52
6
15
25
1.66
40404--40608
54
3.8
53
85
7
263
52
6
15
25
1.66
40846--41086
43
5.6
41
77
9
214
56
6
18
17
1.62
40829--41242
22
18.8
22
74
14
263
55
6
19
18
1.64
41066--41119
15
3.7
15
73
9
58
57
5
20
16
1.59
40821--41064
128
1.8
137
71
14
88
56
6
19
17
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40967--41219
139
1.9
137
81
6
309
54
7
18
18
1.66
48826--48860
3
12.3
3
88
11
56
34
0
0
65
0.93
51461--51512
25
2.1
25
85
7
70
34
13
13
38
1.84
52079--52130
25
2.1
25
85
7
70
34
13
13
38
1.84

Tables:   1

The End!