Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007518.1 Corchorus capsularis cultivar CVL-1 contig07539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42808

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3560--3658
29
3.3
29
76
8
110
24
26
14
35
1.93
5965--6027
31
2.0
31
87
6
92
28
19
4
47
1.69
6128--6190
31
2.0
31
87
6
92
30
20
4
44
1.72
5915--6252
163
2.1
163
96
0
615
35
13
6
44
1.70
6708--6869
22
7.3
22
75
10
116
32
9
19
38
1.83
6901--6963
22
2.9
22
81
9
74
39
7
17
34
1.79
6891--7019
56
2.3
56
80
7
129
37
7
17
37
1.79
6980--7286
22
13.8
21
71
16
149
40
9
15
34
1.80
7074--7860
44
17.9
44
67
15
213
39
9
16
34
1.81
7392--7461
19
3.5
20
78
7
79
42
11
18
27
1.84
7386--7461
39
1.9
40
89
7
120
42
10
21
26
1.85
7477--7595
22
5.4
22
71
13
91
44
8
16
30
1.77
7622--7725
23
4.6
23
84
1
95
39
8
11
40
1.72
7600--7723
22
5.5
23
80
3
94
39
8
12
39
1.74
7668--7736
22
3.1
22
85
0
75
37
10
13
39
1.78
7938--7991
22
2.5
22
84
0
63
40
11
11
37
1.76
30168--30224
23
2.5
23
85
5
80
21
45
15
17
1.85
30313--30430
26
4.5
27
77
6
118
29
38
13
17
1.88
30310--30430
52
2.3
52
81
2
145
29
39
13
17
1.87
39188--39270
42
1.9
44
92
4
143
32
2
16
48
1.60
42321--42353
15
2.3
15
89
5
50
15
18
12
54
1.71

Tables:   1

The End!