Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007521.1 Corchorus capsularis cultivar CVL-1 contig07542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44692

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5378--5428
26
2.0
26
96
0
93
43
11
15
29
1.82
7247--7303
22
2.7
22
82
17
77
35
10
36
17
1.84
7376--7402
3
9.0
3
100
0
54
33
0
0
66
0.92
8419--8471
26
2.0
26
81
0
61
49
1
24
24
1.61
8427--8481
26
2.1
26
89
0
83
47
1
23
27
1.62
16857--17280
75
5.7
75
92
2
577
51
5
24
18
1.66
24855--24891
19
1.9
19
94
0
65
18
8
21
51
1.72
34340--34385
5
9.6
5
90
9
78
58
0
0
41
0.98
34391--34436
24
1.9
24
81
0
56
19
4
15
60
1.51
35321--35383
29
2.2
29
83
11
76
20
15
12
50
1.77
35557--35633
29
2.6
28
70
11
66
44
14
22
19
1.86
38313--38386
6
12.3
6
83
11
80
77
1
17
4
1.00
38679--38720
6
6.7
6
88
5
57
2
0
11
85
0.68
38679--38720
19
2.2
19
91
8
68
2
0
11
85
0.68
39235--39259
12
2.1
12
100
0
50
52
0
16
32
1.44
40078--40252
86
2.0
87
95
2
316
40
12
9
38
1.75
41733--42375
22
29.9
22
68
12
220
34
15
10
39
1.81
42001--42102
23
4.5
23
78
1
82
38
14
8
38
1.78
42261--42309
19
2.5
19
93
3
80
24
18
12
44
1.84
42415--42562
22
6.6
22
76
5
120
35
12
9
42
1.76
42525--42625
21
4.6
22
70
21
77
33
15
8
41
1.79
42663--42713
22
2.3
22
80
6
59
43
15
7
33
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42820--42877
22
2.5
22
80
5
71
39
20
8
31
1.83
42867--42976
22
5.0
22
81
5
107
37
18
10
33
1.86
43140--43177
19
2.0
20
85
15
53
63
2
5
28
1.30
43489--43553
31
2.1
31
82
5
78
53
3
13
29
1.55
44631--44678
2
24.0
2
100
0
96
50
0
50
0
1.00

Tables:   1

The End!