genome.fa.s7524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007524.1 Corchorus capsularis cultivar CVL-1 contig07545, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92921

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1412--1475	13	5.1	13	77	5	51	29	14	14	42	1.84
1433--1475	13	3.3	13	86	0	59	25	13	16	44	1.85
14149--14199	2	26.0	2	80	11	61	45	1	1	50	1.24
14271--14315	18	2.4	18	81	7	54	55	8	0	35	1.31
17455--17528	29	2.5	29	80	12	87	50	9	25	14	1.73
22346--22524	53	3.4	53	90	2	288	38	27	14	18	1.90
38456--38498	18	2.4	19	88	7	63	53	18	9	18	1.70
38523--38574	26	2.0	26	100	0	104	38	11	19	30	1.87
40080--40152	3	24.3	3	94	0	128	67	2	0	30	1.05
41900--42051	74	2.1	74	92	2	252	38	8	29	23	1.84
42148--42198	3	17.0	3	100	0	102	66	0	0	33	0.92
53189--53221	17	2.0	17	88	5	50	57	6	9	27	1.53
55868--55921	20	2.7	20	78	16	67	75	0	20	3	0.95
55874--55951	20	3.9	18	74	22	68	76	0	19	3	0.93
62719--62756	20	1.9	20	84	10	51	15	42	0	42	1.47
65033--65071	20	2.0	20	84	0	51	12	41	0	46	1.42
68542--68574	13	2.6	13	90	4	50	33	3	12	51	1.54
70636--70697	21	3.0	21	97	0	115	20	4	17	56	1.59
70639--70710	21	3.5	21	92	1	110	20	5	16	56	1.60
79992--80030	14	2.6	14	88	8	51	48	35	5	10	1.59
85755--85901	60	2.5	60	94	0	249	32	15	8	42	1.78
86107--88462	818	2.8	815	81	9	2803	30	17	13	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88456--90938	818	3.0	831	86	5	3406	31	17	13	38	1.88
90486--90532	22	2.1	23	84	4	60	10	2	17	70	1.26
91153--91233	41	2.0	41	92	0	135	28	13	16	41	1.86

Tables:   1

The End!