Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007527.1 Corchorus capsularis cultivar CVL-1 contig07548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49772

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
961--1086
66
1.9
64
85
9
175
48
19
11
20
1.79
3551--3606
15
3.6
15
76
13
51
8
14
32
44
1.76
5048--5075
10
2.8
10
100
0
56
10
0
39
50
1.37
5073--5127
2
28.0
2
76
10
51
40
7
1
50
1.40
5390--6180
349
2.2
350
85
4
1040
30
17
18
33
1.94
8105--8149
22
2.0
22
95
0
81
40
6
0
53
1.27
8117--8148
16
2.1
15
94
5
55
40
6
0
53
1.26
11971--12012
20
2.0
20
86
4
57
16
16
11
54
1.70
14730--14779
10
4.5
11
75
14
50
30
4
0
66
1.10
17524--17605
33
2.5
33
91
0
137
42
18
8
30
1.80
17592--17696
33
3.2
33
79
2
122
45
20
8
25
1.79
30197--30246
26
1.9
26
83
0
64
18
20
12
50
1.78
36332--36384
22
2.3
23
87
12
74
69
3
11
15
1.31
36447--37398
476
2.0
476
96
0
1771
43
15
14
26
1.86
45000--45070
34
2.1
34
89
0
106
28
16
8
46
1.76
47378--47451
29
2.6
29
87
6
98
13
12
31
43
1.81

Tables:   1

The End!