Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000753.1 Corchorus capsularis cultivar CVL-1 contig00753, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32


Found at i:476 original size:3 final size:3

Alignment explanation


    Indices: 468--492  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        458 GAACGAGTAG

                                             
        468 AGA AGA AGA AGA AGA AGA AGA AGA A
          1 AGA AGA AGA AGA AGA AGA AGA AGA A

        493 AAACAAGGAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (3 bp):   
AGA

Found at i:1029 original size:15 final size:15

Alignment explanation


    Indices: 1009--1051  Score: 61
    Period size: 15  Copynumber: 2.9  Consensus size: 15

        999 ACTTTCCATG

                    *       
       1009 GGAGAGTGTTTC-CAA
          1 GGAGAGTGATTCTC-A

                           
       1024 GGAGAGTGATTCTCA
          1 GGAGAGTGATTCTCA

                         
       1039 GGAGAGTGATTCT
          1 GGAGAGTGATTCT

       1052 ATG


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  15   25  0.96
  16    1  0.04

ACGTcount: A:0.26, C:0.12, G:0.35, T:0.28


Consensus pattern (15 bp):   
GGAGAGTGATTCTCA
Done.