Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007530.1 Corchorus capsularis cultivar CVL-1 contig07551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53632

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5885--5914
14
2.1
14
93
0
51
50
20
6
23
1.71
6516--6600
41
2.0
42
86
2
118
29
20
27
23
1.99
6538--6765
102
2.2
103
83
5
277
28
14
28
28
1.96
6600--6703
42
2.5
42
84
3
131
29
16
25
27
1.97
6686--6722
19
1.9
19
100
0
74
35
5
27
32
1.79
6644--6841
60
3.3
59
84
4
236
27
14
28
29
1.95
6797--6842
19
2.5
18
86
6
74
39
4
26
30
1.75
6852--7013
38
4.3
38
88
1
238
28
17
20
32
1.96
7406--7563
73
2.2
73
83
2
192
22
17
27
32
1.96
10824--10883
15
4.3
14
80
17
63
38
15
6
40
1.73
14506--14547
11
3.8
11
87
0
57
50
2
4
42
1.36
14501--14547
22
2.1
22
96
0
85
48
4
4
42
1.42
14858--14887
7
4.4
7
95
4
53
90
0
0
10
0.47
15695--15892
103
1.9
108
84
10
273
38
7
3
50
1.47
20871--20895
4
6.2
4
100
0
50
24
0
0
76
0.80
27595--27731
58
2.4
58
79
8
156
27
10
18
43
1.84
27718--27828
57
1.9
58
88
1
170
20
9
27
41
1.84
27776--27987
74
2.9
74
91
0
336
20
11
25
41
1.86
28015--28062
21
2.3
20
80
16
53
22
10
20
45
1.81
28604--28644
2
20.5
2
84
0
55
51
7
0
41
1.30
29343--29405
33
1.9
33
96
0
117
20
6
38
34
1.78
30316--30360
22
2.2
21
84
11
58
4
55
0
40
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30324--30368
22
2.0
22
83
8
56
4
55
4
35
1.40
35921--35980
18
3.5
17
82
14
70
8
21
0
70
1.14
36719--36744
13
2.0
13
100
0
52
46
15
7
30
1.74
40317--40362
11
4.3
11
80
5
58
80
2
17
0
0.81
40318--40371
5
10.8
5
82
11
58
79
1
18
0
0.82
43717--43771
26
2.2
26
83
9
69
29
1
7
61
1.33
46111--46143
17
1.9
17
93
0
57
6
18
0
75
1.00
48434--48460
14
1.9
14
100
0
54
3
14
22
59
1.51

Tables:   1

The End!