Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007532.1 Corchorus capsularis cultivar CVL-1 contig07553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14754

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1553--1589
19
2.0
18
89
5
56
40
2
21
35
1.68
6104--6143
2
21.5
2
85
14
59
47
0
0
52
1.00
6104--6143
12
3.2
13
89
10
66
47
0
0
52
1.00
6263--6819
22
25.7
21
68
12
211
35
15
10
39
1.81
6403--6510
45
2.4
44
80
7
112
40
17
10
31
1.83
6570--6653
23
3.7
23
80
4
91
38
14
7
40
1.73
6548--6653
45
2.4
45
82
4
126
36
15
9
38
1.79
6901--7071
22
7.8
22
69
15
88
34
13
9
42
1.76
6899--7050
66
2.3
66
80
4
173
34
13
9
41
1.78
6966--7132
22
7.6
22
72
11
92
34
14
10
40
1.81
7250--7375
22
5.7
22
74
12
107
38
18
8
34
1.82
7418--7476
22
2.6
22
78
5
64
42
18
5
33
1.72
7649--7707
31
1.9
31
86
6
84
47
3
20
28
1.66
13394--13456
31
2.0
32
85
11
87
28
3
12
55
1.52

Tables:   1

The End!