Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007533.1 Corchorus capsularis cultivar CVL-1 contig07554, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51941

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2354--2391
3
12.7
3
100
0
76
65
0
0
34
0.93
9103--9151
21
2.3
20
83
10
62
10
30
26
32
1.89
9868--9919
25
2.1
24
82
3
59
15
17
15
51
1.76
10593--10629
19
1.9
19
100
0
74
43
10
13
32
1.79
15764--15796
6
5.5
6
100
0
66
54
15
0
30
1.41
26448--26496
21
2.5
19
78
18
55
42
20
4
32
1.71
29212--29666
150
3.0
150
92
2
763
53
3
7
35
1.46
29349--29395
14
3.4
14
70
5
51
59
2
8
29
1.39
29218--29666
149
3.0
150
93
2
751
53
2
8
36
1.45
30930--30979
18
2.7
19
78
9
59
6
26
0
68
1.13
32615--32640
12
2.2
12
100
0
52
42
0
7
50
1.31
41877--41915
19
2.1
18
85
4
51
30
20
5
43
1.73
42621--42679
31
1.9
31
89
0
91
55
18
5
20
1.61
48902--48935
16
2.1
16
94
0
59
14
17
0
67
1.23

Tables:   1

The End!