Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007534.1 Corchorus capsularis cultivar CVL-1 contig07555, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105509

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3960--3995
18
2.0
18
88
0
54
19
2
47
30
1.64
5167--5206
12
3.3
12
82
0
53
12
32
25
30
1.92
5193--5279
33
2.7
32
91
5
124
10
27
37
24
1.88
5205--5279
33
2.3
33
97
0
141
10
26
40
22
1.87
10769--10799
12
2.6
12
89
0
53
9
29
29
32
1.89
16421--16514
38
2.5
38
94
1
163
18
10
20
51
1.75
31122--31147
1
26.0
1
100
0
52
0
0
0
100
0.00
38745--38947
104
1.9
106
93
5
356
47
11
6
33
1.67
39308--39342
11
3.2
11
83
0
52
77
17
5
0
0.96
39678--39710
16
2.1
16
88
11
50
66
15
9
9
1.43
40875--40908
2
17.0
2
100
0
68
50
0
0
50
1.00
50035--50076
21
2.0
21
90
4
68
52
7
23
16
1.68
50070--50180
54
1.9
58
81
13
133
54
1
22
20
1.53
50163--50402
22
11.3
21
76
14
217
53
3
20
22
1.60
50274--50397
7
17.1
7
67
9
52
56
2
20
20
1.53
50357--50579
7
31.9
7
67
12
109
55
2
24
17
1.55
50115--50560
22
22.2
20
68
22
119
54
2
22
19
1.57
50437--50529
34
2.7
34
88
1
132
55
3
23
17
1.56
50368--50497
55
2.3
55
88
1
188
56
3
23
16
1.55
50498--50578
29
2.8
29
83
9
96
53
2
25
18
1.57
53646--53711
31
2.1
31
97
0
123
24
24
15
36
1.93
56580--56714
71
1.9
71
98
0
261
21
22
17
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57570--57639
34
2.2
33
84
7
90
48
7
10
34
1.64
67886--67927
21
2.0
21
90
4
68
52
7
23
16
1.68
68010--68235
22
10.6
22
76
11
152
54
3
20
21
1.58
68160--68241
7
11.3
7
74
7
56
58
1
19
20
1.46
68009--68235
44
5.3
43
77
10
216
54
3
20
21
1.60
68160--68241
15
5.6
14
71
7
56
58
1
19
20
1.46
68037--68398
22
17.0
21
69
19
166
54
3
21
20
1.60
68204--68318
49
2.4
50
88
8
175
58
3
20
17
1.53
68201--68398
7
28.1
7
67
9
89
55
3
22
19
1.56
68336--68396
29
2.1
29
84
6
79
52
3
22
21
1.61
68668--68700
17
2.0
17
88
5
50
51
3
15
30
1.58
86110--86237
39
3.0
45
75
18
137
28
10
18
42
1.83
88263--88311
25
1.9
26
91
4
82
12
18
0
69
1.19
90014--90079
32
2.1
32
94
0
114
25
7
7
59
1.52
91118--91270
75
2.0
76
85
1
209
43
5
20
30
1.76
94488--94664
55
3.2
53
74
12
187
29
16
18
35
1.93
101973--102008
18
2.1
17
94
5
63
63
8
16
11
1.49
102470--102494
10
2.5
10
100
0
50
28
8
24
40
1.83

Tables:   1

The End!