Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007535.1 Corchorus capsularis cultivar CVL-1 contig07556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45613

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2580--2626
22
2.1
22
96
0
85
42
4
6
46
1.48
2580--2622
11
3.9
11
90
0
68
41
4
6
46
1.51
2817--2850
16
2.0
18
88
11
54
0
14
2
82
0.79
15075--15122
22
2.1
23
85
11
64
33
41
18
6
1.76
15106--15159
21
2.5
22
76
8
58
46
35
7
11
1.67
19371--19429
31
1.9
31
86
6
84
30
13
3
52
1.57
19529--19605
38
2.1
35
88
11
111
16
15
9
58
1.62
19742--19780
20
2.0
20
85
10
53
28
5
2
64
1.28
19927--20011
42
2.0
43
84
6
111
37
12
16
32
1.87
20173--20228
22
2.6
22
86
8
80
39
3
17
39
1.67
20251--20483
22
10.5
22
73
11
131
42
10
14
33
1.79
20251--20481
44
5.2
44
74
8
184
41
10
14
33
1.79
20312--20459
66
2.2
66
79
2
154
41
10
14
34
1.79
20564--20614
19
2.6
20
90
6
86
45
11
17
25
1.83
20597--20896
22
13.8
22
69
16
135
40
9
15
35
1.80
20793--20896
23
4.6
23
84
3
122
37
10
14
37
1.81
20839--20907
22
3.1
22
77
4
68
36
13
13
37
1.83
25235--25271
16
2.4
16
86
13
51
24
8
5
62
1.44
37045--37145
51
1.9
53
90
4
161
33
13
12
39
1.83

Tables:   1

The End!