genome.fa.s7537.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007537.1 Corchorus capsularis cultivar CVL-1 contig07558, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44194

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--177	6	32.2	6	96	3	242	36	18	18	27	1.94
2--198	30	7.5	25	93	6	224	35	18	18	26	1.95
10019--10068	21	2.4	21	89	0	73	8	34	0	58	1.28
10188--10234	20	2.3	20	96	0	85	29	10	31	27	1.90
11033--11258	75	3.0	74	87	5	301	33	18	23	25	1.97
13500--13531	15	2.1	16	94	5	57	71	0	0	28	0.86
14859--14891	15	2.1	16	88	5	50	27	45	21	6	1.75
14913--15046	16	8.5	15	77	12	110	30	40	21	7	1.81
14928--15045	32	3.7	32	89	2	166	31	38	22	8	1.84
14928--15046	48	2.5	47	78	10	125	31	37	21	8	1.84
15000--15047	25	1.9	24	84	16	62	33	37	20	8	1.83
17843--17882	14	2.8	15	78	21	50	52	0	0	47	1.00
20198--20259	16	3.9	16	84	0	88	30	35	24	9	1.87
20191--20259	32	2.2	32	89	0	102	30	36	24	8	1.86
22480--22545	26	2.5	26	85	4	89	15	15	40	28	1.87
22586--22755	23	7.4	23	85	5	211	16	16	40	26	1.89
22601--22756	68	2.3	69	89	1	242	16	15	41	27	1.88
23177--23310	61	2.3	57	87	7	180	20	6	11	61	1.53
23361--23653	37	7.8	37	88	2	415	18	22	29	29	1.97
23361--23653	150	2.0	149	89	2	453	18	22	29	29	1.97
23956--24050	49	1.9	49	85	4	129	14	18	22	44	1.86
24378--24692	57	5.5	57	89	0	459	14	24	18	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28847--28926	40	2.0	40	82	7	99	53	10	8	27	1.63
30825--30902	12	6.7	12	91	1	115	60	7	24	7	1.51
30923--30987	19	3.5	19	66	21	57	52	10	10	26	1.69
30924--30987	20	3.5	20	62	27	50	53	9	10	26	1.66
30994--31053	21	3.2	20	63	31	51	53	8	15	23	1.68
30903--31089	35	5.3	35	92	1	266	48	12	13	25	1.77
31160--31279	22	5.4	22	81	2	150	50	8	23	18	1.74
31154--31287	33	4.0	33	86	1	178	49	8	23	18	1.74
31160--31287	11	11.5	11	81	1	130	49	8	24	17	1.75
31281--32051	36	21.7	36	82	4	861	43	9	20	25	1.83
32055--32162	32	3.3	31	77	19	119	46	7	16	29	1.74
32065--32183	36	3.4	34	79	17	138	45	8	17	28	1.78
32055--32183	68	1.9	68	90	6	208	46	7	17	28	1.75
32873--33051	89	2.0	90	93	1	306	13	28	31	26	1.94
33911--34022	48	2.3	49	82	1	136	35	17	27	18	1.94
33955--34211	84	2.9	86	83	10	279	28	16	30	24	1.97
34039--34511	49	9.6	49	80	6	408	31	14	29	24	1.95
33911--34153	132	1.8	132	85	3	346	32	17	28	21	1.96
37973--38120	42	3.5	42	91	3	228	16	21	21	40	1.91
40545--40663	18	6.6	18	80	3	114	25	41	21	11	1.87
40545--40663	54	2.2	54	81	3	132	25	41	21	11	1.87
40788--40826	15	2.7	15	88	4	53	38	15	28	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41899--41978	30	2.7	30	90	0	115	33	31	21	13	1.92
41959--42053	15	6.3	15	76	9	86	27	27	30	14	1.95
41959--42038	30	2.7	30	96	0	142	25	28	31	15	1.95

Tables:   1

The End!