Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007539.1 Corchorus capsularis cultivar CVL-1 contig07560, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46002

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
925--974
17
2.9
17
78
0
64
30
24
34
12
1.91
3270--3359
35
2.6
35
78
7
94
23
28
23
24
1.99
4512--4554
16
2.7
16
85
0
50
27
23
27
20
1.99
6854--6893
20
2.0
20
85
0
53
37
20
27
15
1.92
9025--9225
41
4.8
43
76
8
164
38
26
12
21
1.89
9018--9258
84
2.9
83
82
6
272
38
26
10
23
1.88
9023--9258
41
5.7
40
72
16
124
39
27
11
22
1.87
9150--9258
43
2.6
43
79
13
120
44
26
8
21
1.80
12272--12314
22
2.0
22
90
0
68
37
18
6
37
1.78
13906--13946
21
2.0
21
85
0
55
29
21
9
39
1.86
15054--15090
19
2.0
18
89
5
56
43
2
21
32
1.67
19124--19159
19
1.9
18
88
5
54
33
22
2
41
1.68
29217--29253
15
2.5
15
90
0
56
48
18
24
8
1.75
32112--32171
22
2.9
22
76
19
65
43
3
18
35
1.67
32122--32159
19
2.1
18
90
5
58
44
2
21
31
1.66
33490--33520
6
5.3
6
96
3
55
35
0
12
51
1.40
34279--34314
19
1.9
18
88
5
54
41
2
22
33
1.68
42352--42442
39
2.3
39
88
3
139
51
2
36
9
1.47

Tables:   1

The End!