Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007540.1 Corchorus capsularis cultivar CVL-1 contig07561, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1561
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36


Found at i:355 original size:94 final size:94

Alignment explanation


    Indices: 257--496  Score: 381
    Period size: 94  Copynumber: 2.5  Consensus size: 94

        247 AAGTTATCCC

                                                                       *    *
        257 TATCATGAAGAATCTCTGCAAAAATTGTCTCCAACTATGTCAATAATGCAAGGCTGACTTATTGG
          1 TATCATGAAGAATCTCTGCAAAAATTGTCTCCAACTATGTCAATAATGCAAGGCTGACTCATTGA

                                         
        322 ATGAAGATAAAGCAAATGGTCTGCAAAGT
         66 ATGAAGATAAAGCAAATGGTCTGCAAAGT

                                                                             
        351 TATCATGAAGAATCTCTGCAAAAATTGTCTCCAACTATGTCAATAATGCAAGGCTGACTCATTGA
          1 TATCATGAAGAATCTCTGCAAAAATTGTCTCCAACTATGTCAATAATGCAAGGCTGACTCATTGA

                                         
        416 ATGAAGATAAAGCAAATGGTCTGCAAAGT
         66 ATGAAGATAAAGCAAATGGTCTGCAAAGT

                                   *                 *          
        445 TATCCAAATTATGAAGGAATCTCAGCAAAAATTGTCTCCAATTATGTCAATA
          1 TAT-C-----ATGAA-GAATCTCTGCAAAAATTGTCTCCAACTATGTCAATA

        497 GTACAAAGTA


Statistics
Matches: 135,  Mismatches: 4, Indels: 7
        0.92            0.03        0.05

Matches are distributed among these distances:
  94   95  0.70
  95    1  0.01
 100    5  0.04
 101   34  0.25

ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28


Consensus pattern (94 bp):   
TATCATGAAGAATCTCTGCAAAAATTGTCTCCAACTATGTCAATAATGCAAGGCTGACTCATTGA
ATGAAGATAAAGCAAATGGTCTGCAAAGT
Done.