Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007551.1 Corchorus capsularis cultivar CVL-1 contig07572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2633
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Found at i:841 original size:333 final size:332
Alignment explanation
Indices: 227--1945 Score: 2603
Period size: 333 Copynumber: 5.2 Consensus size: 332
217 CTTGCCCTAG
* **
227 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAATATTGAAACCCTTTTCACGCTTAAAA
1 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCTT-AAA
* *
292 ATATCATTTTTCTTATTTTATTCTGAATTAATTTCAAAATAAATTGAAACAAGATTCTGATGCTC
65 ATATCATTTTTCTTATTTTTTTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTGATGCTC
* *
357 GTAAAAACATATCCTTAAATCCAACATTGCTGAAATTTTGTTAAATGAATATAGATATTTCAAGA
130 GTAAAAACAGATCCTTAAATCCAACA-TGCTGAAATTTTGTTAGATGAATATAGATATTTCAAGA
* * * * *
422 AGTATTGGCGAAAAAAATCAGGCAAAACTGAGTCGGGGCCCCGGAACGCGCTTTTAGCCGAAAAC
194 AGTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAAC
* * *
487 CGTGATGGTTAGTACACGATTTCGGCTAAAATTTAGCAAAAAATGTCCCGAAAGATTTTTCATCA
259 CGTGATGGTTAGTACACGATTTCGGCTAAAATTTAGCAAAAATTGCCCCGAAATATTTTTCATCA
*
552 ATTTTTTAC
324 ATTTTTTGC
561 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCTTAAAA
1 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCTTAAAA
*
626 TATCATTTTTCTTATTTTTTTCTGAATTAATTTTAAAATAAATCGAAACAAGATTCTGATGCTCG
66 TATCATTTTTCTTATTTTTTTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTGATGCTCG
* *
691 TAAAAACAGATCCTTAAATCCAACGTGGCTGAAAATTTGTTAGATGAATATAGATACTTT-AAGA
131 TAAAAACAGATCCTTAAATCCAACAT-GCTGAAATTTTGTTAGATGAATATAGATA-TTTCAAGA
* * * *
755 AGTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGAGTTTATCGCCGAAAAC
194 AGTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAAC
* *
820 TGTGATGGTTAGTAAACGATTTCGGCTAAAATTTAGCAAAAATTGCCCCGAAATATTTTTCATCA
259 CGTGATGGTTAGTACACGATTTCGGCTAAAATTTAGCAAAAATTGCCCCGAAATATTTTTCATCA
*
885 ATTTTTTGT
324 ATTTTTTGC
* *
894 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGGCTTTACACGCTTAAAA
1 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCTTAAAA
* *
959 TATCATTTTTCTTATTTCTTTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTGATGCTCA
66 TATCATTTTTCTTATTTTTTTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTGATGCTCG
* *
1024 TAAAAACAGATCCTTAAATCCAACAATGCTGACATTTTGTTAGATGAATATAGATACTTCAAGAA
131 TAAAAACAGATCCTTAAATCCAAC-ATGCTGAAATTTTGTTAGATGAATATAGATATTTCAAGAA
1089 GTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACC
195 GTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACC
* *
1154 GTGAT-G---GTACACGATTTCGGCTAAAATTTATCAAAAATTGCCCCGAAAGATTTTTCATCAA
260 GTGATGGTTAGTACACGATTTCGGCTAAAATTTAGCAAAAATTGCCCCGAAATATTTTTCATCAA
*
1215 TTTTTCGC
325 TTTTTTGC
* * * * *
1223 CAAAATACTCCTAAAAAATATTTAATTCAACTCCAAAAATATTGAAGTCCTTTTCACGTTTAAAA
1 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCTTAAAA
* *
1288 TATCATTTTTCTT-TTTTCTCTCTGTATTAATTTCAAAATAAATCG-AACAAAGATTCTGATGCT
66 TATCATTTTTCTTATTTT-TTTCTGAATTAATTTCAAAATAAATCGAAAC-AAGATTCTGATGCT
* *
1351 CGTAAAAACAGATCCTTAAATCGAACAATACTGAAATTTTGTTAGATGAATATAGATATTTCAAG
129 CGTAAAAACAGATCCTTAAATCCAAC-ATGCTGAAATTTTGTTAGATGAATATAGATATTTCAAG
* * **
1416 AAGTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGTGGCCCCGGAACGCTTTTTTATTCAAAAA
193 AAGTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAA
* * *
1481 CCATGATGGTTAGTACACGATTTC-GC-ATAAATTTAGCAAAAATTACCTCGAAATATTTTTCAT
258 CCGTGATGGTTAGTACACGATTTCGGCTA-AAATTTAGCAAAAATTGCCCCGAAATATTTTTCA-
*
1544 TAAATTTTTTGGC
321 TCAATTTTTT-GC
* *
1557 AAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCCTAAAA
1 CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCTTAAAA
** *
1622 TATCATTTTTCTTATTTCATTCTGAATTAATTTCAAAATAAATCGAAATAAGATTCTGATGCTCG
66 TATCATTTTTCTTATTTTTTTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTGATGCTCG
** * ** *
1687 TAAAAACAGATCCTTAAATCCAACGCGAGTGAAATTTTACTAGATGAATATAGATGTTTCGAA-A
131 TAAAAACAGATCCTTAAATCCAACATG-CTGAAATTTTGTTAGATGAATATAGATATTTC-AAGA
* * *
1751 AGTCTTGCCGCAAAAAATCAGGCGAAACTGAGCCGGAGCCCCGGAACGCGTTTTTAGCCAAAAAC
194 AGTCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAAC
* * *
1816 CATGATGGTTAGTACACGATTTCAGCTAAAATTTAGTAAAAATTGCCCCGAAATATTTTTCATCA
259 CGTGATGGTTAGTACACGATTTCGGCTAAAATTTAGCAAAAATTGCCCCGAAATATTTTTCATCA
1881 ATTTTTTGC
324 ATTTTTTGC
* *
1890 CAAAAATGCTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGTCTTTTC
1 C-AAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTC
1946 TGAATTAATT
Statistics
Matches: 1262, Mismatches: 103, Indels: 40
0.90 0.07 0.03
Matches are distributed among these distances:
328 6 0.00
329 295 0.23
330 1 0.00
331 1 0.00
332 36 0.03
333 513 0.41
334 369 0.29
335 40 0.03
336 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (332 bp):
CAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCTTAAAA
TATCATTTTTCTTATTTTTTTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTGATGCTCG
TAAAAACAGATCCTTAAATCCAACATGCTGAAATTTTGTTAGATGAATATAGATATTTCAAGAAG
TCTTGGCGCAAAAAATCAGGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTTAGCCAAAAACCG
TGATGGTTAGTACACGATTTCGGCTAAAATTTAGCAAAAATTGCCCCGAAATATTTTTCATCAAT
TTTTTGC
Found at i:2293 original size:302 final size:302
Alignment explanation
Indices: 1641--2579 Score: 893
Period size: 302 Copynumber: 3.0 Consensus size: 302
1631 TCTTATTTCA
* * * * *
1641 TTCTGAATTAATTTCAAAATAAATCGAAATAAGATTCTGATGCTCGTAAAAA--CAGATCCTTAA
1 TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTAATGTTC--AAAAATTCAGATCCTTAA
* *
1704 ATCCAACGCGAGTGAAATTTTACTAGATGAATATAGATGTTTCGAAAAGTCTTGCCGCAAAAAAT
64 ATCCAACGCGACTGAAATTTTACTAGATGAATATAGATATTTCGAAAAGTCTTGCCGCAAAAAAT
* * *
1769 CAGGCGAAACTGAGCCGGAGCCCCGGAACGCGTTTTTAGCCAAAAACCATGATGGTTAGTACACG
129 CAGGCAAAACTGAGCCGGAGCCCCAGAACGCGTTTTTAGCCAAAAACCATGATGGTTACTACACG
* * * *
1834 ATTTCAGCTAAAATTTAGTAAAAATTGCCCCGAAATATTTTTCATCAATTTTTTGCCAAAAATGC
194 ATTTCAGCTAAAATTTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAAAAATAC
* *
1899 TCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGTCTT
259 TCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAAGCCTT
**
1943 TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTGCTGTTCAAAAATTCAGATCCTTAAAT
1 TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTAATGTTCAAAAATTCAGATCCTTAAAT
* ** * *
2008 CCAACGTTG-CTGAAATTTTGTTAGATTAATATAGATATTTC-AAGAAGTCTTGGCGCAAAAAAT
66 CCAACG-CGACTGAAATTTTACTAGATGAATATAGATATTTCGAA-AAGTCTTGCCGCAAAAAAT
* * *
2071 CAGG-AAAACTGAGTCGGGGCCCCAGAACGCGTTTTTTAGCC-AAAACCGTGAT-GTAATACTAC
129 CAGGCAAAACTGAGCCGGAGCCCCAGAACGCG-TTTTTAGCCAAAAACCATGATGGT--TACTAC
* *
2133 ACGATTTCGGCTAAAA-TTAGCAAAAATTGCCCCGAAATACTTCTCTTCAATTTTTTGCC-AAAA
191 ACGATTTCAGCTAAAATTTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAAAAA
*
2196 TACTCGTAAAAAATATATAATTCAACTCCAAAAATATTGAAAGCCTT
256 TACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAAGCCTT
* ** * * ** ** *
2243 TTCACGCTGAAAATATCATTTTTCATATTTTATTCTGAATTAATTTCAAAATAAATCG--AAACA
1 TT----CTG--AAT-T-A-ATTTCA-AAATAAATC-GAAACAA---CAATCT-AAT-GTTCAA-A
* **
2306 AGATTCTA-ATGCTCGTATAAACAGATCCTTAAATC-CAACATGGCCAAAATTTTGTTAGATGAA
49 A-ATTC-AGAT-C-C-T-T--A-A-ATCC---AA-CGCGAC-T-G---AAATTTTACTAGATGAA
* * *
2369 TATAGATATTTC-AAGAAGTCTTGGCGCAAAAAATCAGGCAAAACTGAGTCGGGGCCCCAGAACG
95 TATAGATATTTCGAA-AAGTCTTGCCGCAAAAAATCAGGCAAAACTGAGCCGGAGCCCCAGAACG
* * * *
2433 CGTTTTTAGCCAAAAACCGTGAT-GTAATACTACACGATTTCGGCTAAAAATTAGCAAAAATTTC
159 CGTTTTTAGCCAAAAACCATGATGGT--TACTACACGATTTCAGCTAAAATTTAGCAAAAATTGC
2497 CCCGAAATACTTCTCATCAATTTTTTGCC-AAAATACTCGTAAAAAATATATAATTCAACTCCAA
222 CCCGAAATACTTCTCATCAATTTTTTGCCAAAAATACTCGTAAAAAATATATAATTCAACTCCAA
* *
2561 AAATATTCAAAGCCTT
287 AAAGATTGAAAGCCTT
2577 TTC
1 TTC
2580 ACGCTGAAAA
Statistics
Matches: 545, Mismatches: 45, Indels: 66
0.83 0.07 0.10
Matches are distributed among these distances:
300 56 0.10
301 74 0.14
302 137 0.25
303 1 0.00
304 3 0.01
306 3 0.01
307 1 0.00
308 1 0.00
309 5 0.01
310 5 0.01
311 5 0.01
314 6 0.01
315 3 0.01
316 7 0.01
317 2 0.00
318 1 0.00
319 1 0.00
320 1 0.00
322 1 0.00
323 1 0.00
324 4 0.01
327 3 0.01
328 2 0.00
329 1 0.00
330 1 0.00
332 63 0.12
333 64 0.12
334 93 0.17
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.29
Consensus pattern (302 bp):
TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTAATGTTCAAAAATTCAGATCCTTAAAT
CCAACGCGACTGAAATTTTACTAGATGAATATAGATATTTCGAAAAGTCTTGCCGCAAAAAATCA
GGCAAAACTGAGCCGGAGCCCCAGAACGCGTTTTTAGCCAAAAACCATGATGGTTACTACACGAT
TTCAGCTAAAATTTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAAAAATACTC
GTAAAAAATATATAATTCAACTCCAAAAAGATTGAAAGCCTT
Found at i:2538 original size:634 final size:635
Alignment explanation
Indices: 1308--2563 Score: 1838
Period size: 634 Copynumber: 2.0 Consensus size: 635
1298 CTTTTTTCTC
*
1308 TCTGTATTAATTTCAAAATAAATCGAACAAAGATTCTGATGCTCGTAAAAACAGATCCTTAAATC
1 TCTGAATTAATTTCAAAATAAATCGAACAAAGATTCTGATGCTCG-AAAAACAGATCCTTAAATC
*
1373 GAACAATACTGAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATCAG
65 CAACAATACTGAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATCAG
* * * *
1438 GCAAAACTGAGCCGTGGCCCCGGAACGCTTTTTTATTCAAAAACCATGATGGTTAGTACACGATT
130 GCAAAACTGAGCCGGGGCCCCAGAACGCTTTTTTATGCAAAAACCATGATGGTTACTACACGATT
* * * *
1503 TCGCATAAATTTAGCAAAAATTACCTCGAAATATTTTTCATTAAATTTTTTGGCAAAAATACTCG
195 TCGCATAAAATTAGCAAAAATTACCCCGAAATACTTCTCATTAAATTTTTTGGCAAAAATACTCG
*
1568 TAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGCCTTTTCACGCCTAAAATATCATTTTTC
260 TAAAAAATATATAATTCAACTCCAAAAAGATTGAAAGCCTTTTCACGCCTAAAATATCATTTTTC
* * *
1633 TTATTTCATTCTGAATTAATTTCAAAATAAATCGAAATAAGATTCTGATGCTCGTAAAAACAGAT
325 ATATTTCATTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTAATGCTCGTAAAAACAGAT
* ** *
1698 CCTTAAATCCAACGCGAGTGAAATTTTACTAGATGAATATAGATGTTTCGAAAAGTCTTGCCGCA
390 CCTTAAATCCAACACGAGCAAAATTTTACTAGATGAATATAGATATTTCGAAAAGTCTTGCCGCA
* * *
1763 AAAAATCAGGCGAAACTGAGCCGGAGCCCCGGAACGCGTTTTTAGCCAAAAACCATGATGGTTAG
455 AAAAATCAGGCAAAACTGAGCCGGAGCCCCAGAACGCGTTTTTAGCCAAAAACCATGATGGTTAC
* * * *
1828 TACACGATTTCAGCTAAAATTTAGTAAAAATTGCCCCGAAATATTTTTCATCAATTTTTTGCCAA
520 TACACGATTTCAGCTAAAAATTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAA
*
1893 AAATGCTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGTCTTT
585 AAATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGTCTTT
* *
1944 TCTGAATTAATTTCAAAATAAATCGAAACAACA-A-TCTGCTGTTC-AAAAATTCAGATCCTTAA
1 TCTGAATTAATTTCAAAATAAATCG-AACAA-AGATTCTGATGCTCGAAAAA--CAGATCCTTAA
** * *
2006 ATCCAACGTTGCTGAAATTTTGTTAGATTAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAAT
62 ATCCAACAATACTGAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAAT
* * *
2071 CAGG-AAAACTGAGTCGGGGCCCCAGAACGCGTTTTTTA-GCCAAAACCGTGAT-GTAATACTAC
127 CAGGCAAAACTGAGCCGGGGCCCCAGAACGC-TTTTTTATGCAAAAACCATGATGGT--TACTAC
* * *
2133 ACGATTTCGGC-TAAAATTAGCAAAAATTGCCCCGAAATACTTCTC-TTCAATTTTTT-GCCAAA
189 ACGATTTC-GCATAAAATTAGCAAAAATTACCCCGAAATACTTCTCATTAAATTTTTTGGCAAAA
*
2195 ATACTCGTAAAAAATATATAATTCAACTCCAAAAATATTGAAAGCCTTTTCACG-CTGAAAATAT
253 ATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAAGCCTTTTCACGCCT-AAAATAT
* *
2259 CATTTTTCATATTTTATTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTAATGCTCGTAT
317 CATTTTTCATATTTCATTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTAATGCTCGTAA
* **
2324 AAACAGATCCTTAAATCCAACATG-GCCAAAATTTTGTTAGATGAATATAGATATTTC-AAGAAG
382 AAACAGATCCTTAAATCCAACACGAG-CAAAATTTTACTAGATGAATATAGATATTTCGAA-AAG
* * * *
2387 TCTTGGCGCAAAAAATCAGGCAAAACTGAGTCGGGGCCCCAGAACGCGTTTTTAGCCAAAAACCG
445 TCTTGCCGCAAAAAATCAGGCAAAACTGAGCCGGAGCCCCAGAACGCGTTTTTAGCCAAAAACCA
* *
2452 TGAT-GTAATACTACACGATTTCGGCTAAAAATTAGCAAAAATTTCCCCGAAATACTTCTCATCA
510 TGATGGT--TACTACACGATTTCAGCTAAAAATTAGCAAAAATTGCCCCGAAATACTTCTCATCA
2516 ATTTTTTGCC-AAAATACTCGTAAAAAATATATAATTCAACTCCAAAAA
573 ATTTTTTGCCAAAAATACTCGTAAAAAATATATAATTCAACTCCAAAAA
2564 TATTCAAAGC
Statistics
Matches: 557, Mismatches: 50, Indels: 28
0.88 0.08 0.04
Matches are distributed among these distances:
633 7 0.01
634 282 0.51
635 103 0.18
636 156 0.28
637 8 0.01
638 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (635 bp):
TCTGAATTAATTTCAAAATAAATCGAACAAAGATTCTGATGCTCGAAAAACAGATCCTTAAATCC
AACAATACTGAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATCAGG
CAAAACTGAGCCGGGGCCCCAGAACGCTTTTTTATGCAAAAACCATGATGGTTACTACACGATTT
CGCATAAAATTAGCAAAAATTACCCCGAAATACTTCTCATTAAATTTTTTGGCAAAAATACTCGT
AAAAAATATATAATTCAACTCCAAAAAGATTGAAAGCCTTTTCACGCCTAAAATATCATTTTTCA
TATTTCATTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTAATGCTCGTAAAAACAGATC
CTTAAATCCAACACGAGCAAAATTTTACTAGATGAATATAGATATTTCGAAAAGTCTTGCCGCAA
AAAATCAGGCAAAACTGAGCCGGAGCCCCAGAACGCGTTTTTAGCCAAAAACCATGATGGTTACT
ACACGATTTCAGCTAAAAATTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAAA
AATACTCGTAAAAAATATATAATTCAACTCCAAAAAGATTGAAGGTCTTT
Found at i:2598 original size:334 final size:331
Alignment explanation
Indices: 1943--2633 Score: 1188
Period size: 334 Copynumber: 2.1 Consensus size: 331
1933 TGAAGGTCTT
** *
1943 TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTGCTGTTCAAAAATTCAGATCCTTAAAT
1 TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTAATGCTCAAAAA-TCAGATCCTTAAAT
* * ** *
2008 CCAACGTTGCTGAAATTTTGTTAGATTAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATCA
65 CCAACATGGCCAAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATCA
2073 GGAAAACTGAGTCGGGGCCCCAGAACGCGTTTTTTAGCCAAAACCGTGATGTAATACTACACGAT
130 GGAAAACTGAGTCGGGGCCCCAGAACGCGTTTTTTAGCCAAAACCGTGATGTAATACTACACGAT
*
2138 TTCGGCTAAAATTAGCAAAAATTGCCCCGAAATACTTCTCTTCAATTTTTTGCCAAAATACTCGT
195 TTCGGCTAAAATTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAAAATACTCGT
*
2203 AAAAAATATATAATTCAACTCCAAAAATATTGAAAGCCTTTTCACGCTGAAAATATCATTTTTCA
260 AAAAAATATATAATTCAACTCCAAAAATATTCAAAGCCTTTTCACGCTGAAAATATCATTTTTCA
2268 TATTTTA
325 TATTTTA
* * *
2275 TTCTGAATTAATTTCAAAATAAATCGAAACAAGATTCTAATGCTCGTATAAA-CAGATCCTTAAA
1 TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTAATGCTC--AAAAATCAGATCCTTAAA
2339 TCCAACATGGCCAAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATC
64 TCCAACATGGCCAAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATC
2404 AGGCAAAACTGAGTCGGGGCCCCAGAACGCG-TTTTTAGCCAAAAACCGTGATGTAATACTACAC
129 AGG-AAAACTGAGTCGGGGCCCCAGAACGCGTTTTTTAGCC-AAAACCGTGATGTAATACTACAC
*
2468 GATTTCGGCTAAAAATTAGCAAAAATTTCCCCGAAATACTTCTCATCAATTTTTTGCCAAAATAC
192 GATTTCGGCT-AAAATTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAAAATAC
2533 TCGTAAAAAATATATAATTCAACTCCAAAAATATTCAAAGCCTTTTCACGCTGAAAATATCATTT
256 TCGTAAAAAATATATAATTCAACTCCAAAAATATTCAAAGCCTTTTCACGCTGAAAATATCATTT
2598 TTCATATTTTA
321 TTCATATTTTA
2609 TTCTGAATTAATTTCAAAATAAATC
1 TTCTGAATTAATTTCAAAATAAATC
Statistics
Matches: 340, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
332 124 0.36
333 60 0.18
334 156 0.46
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.31
Consensus pattern (331 bp):
TTCTGAATTAATTTCAAAATAAATCGAAACAACAATCTAATGCTCAAAAATCAGATCCTTAAATC
CAACATGGCCAAAATTTTGTTAGATGAATATAGATATTTCAAGAAGTCTTGGCGCAAAAAATCAG
GAAAACTGAGTCGGGGCCCCAGAACGCGTTTTTTAGCCAAAACCGTGATGTAATACTACACGATT
TCGGCTAAAATTAGCAAAAATTGCCCCGAAATACTTCTCATCAATTTTTTGCCAAAATACTCGTA
AAAAATATATAATTCAACTCCAAAAATATTCAAAGCCTTTTCACGCTGAAAATATCATTTTTCAT
ATTTTA
Done.