Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007553.1 Corchorus capsularis cultivar CVL-1 contig07574, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 26194
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:23015 original size:23 final size:23

Alignment explanation


    Indices: 22985--23030  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

      22975 CACTCCAGCT

                                   
      22985 TCATAGCTAGAATAAGGAAGATC
          1 TCATAGCTAGAATAAGGAAGATC

                                   
      23008 TCATAGCTAGAATAAGGAAGATC
          1 TCATAGCTAGAATAAGGAAGATC

      23031 ATCTTCAATT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22


Consensus pattern (23 bp):   
TCATAGCTAGAATAAGGAAGATC
Done.