Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007555.1 Corchorus capsularis cultivar CVL-1 contig07576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33416

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
289--373
41
2.1
41
97
0
161
27
14
10
48
1.76
464--489
7
3.7
7
100
0
52
26
0
0
73
0.84
2509--2533
11
2.3
11
100
0
50
8
16
0
76
1.02
15802--16284
239
2.0
239
95
2
878
37
15
10
37
1.81
18381--18508
64
2.0
64
100
0
256
40
3
4
51
1.38
21598--22012
152
2.8
149
92
3
663
35
10
16
37
1.83
24791--24833
16
2.8
16
76
16
54
13
23
27
34
1.93
24807--24935
52
2.5
52
92
0
222
16
24
27
32
1.96
25507--26066
22
25.7
21
67
14
153
37
13
10
39
1.78
25637--25722
45
1.9
45
83
4
111
38
15
12
33
1.85
26210--26289
22
3.6
22
75
6
81
35
12
10
42
1.76
26185--26354
44
3.9
43
77
11
143
35
11
10
41
1.76
26230--26354
22
5.7
22
72
9
85
36
12
10
40
1.77
26273--26377
22
4.8
23
71
18
82
38
12
9
40
1.76
26428--26564
22
6.3
22
70
12
95
37
17
8
36
1.81
26433--26557
66
1.9
66
85
3
171
38
19
8
33
1.82
26602--26649
22
2.2
22
88
0
69
50
22
2
25
1.60
26624--26719
44
2.1
45
79
9
106
39
15
9
35
1.80
26655--26740
22
3.9
22
87
0
127
34
16
12
36
1.87
26637--26739
44
2.3
44
84
3
134
36
13
11
37
1.81
26853--26917
30
2.1
31
94
2
114
47
4
20
27
1.69
27421--27519
52
2.0
52
90
6
159
47
9
9
34
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27837--27920
16
5.3
17
72
20
83
19
9
33
38
1.84
27828--27916
31
2.8
32
93
1
153
19
10
32
38
1.85
27813--27920
32
3.4
31
89
2
162
16
10
35
37
1.83
28082--28190
16
6.8
16
79
1
119
5
13
29
51
1.64
28068--28189
32
3.8
32
91
0
172
6
12
29
51
1.64
28081--28207
64
2.0
64
82
3
157
6
14
32
47
1.69
28686--28775
47
1.9
47
90
0
144
32
12
15
40
1.84

Tables:   1

The End!