Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007556.1 Corchorus capsularis cultivar CVL-1 contig07577, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9738
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.37


Found at i:155 original size:30 final size:29

Alignment explanation


    Indices: 99--155  Score: 69
    Period size: 30  Copynumber: 1.9  Consensus size: 29

         89 ATTGCAAATA

                   *      *      *       
         99 TTTTAAGTACATGGTAAAAGTGTAAATCT
          1 TTTTAAGGACATGGCAAAAGTATAAATCT

                                *       
        128 TTTTAGAGGACATGGCAAAATTATAAAT
          1 TTTTA-AGGACATGGCAAAAGTATAAAT

        156 TTTCACCTAC


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  29    5  0.22
  30   18  0.78

ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35


Consensus pattern (29 bp):   
TTTTAAGGACATGGCAAAAGTATAAATCT

Found at i:7661 original size:8 final size:8

Alignment explanation


    Indices: 7647--7676  Score: 51
    Period size: 8  Copynumber: 3.8  Consensus size: 8

       7637 TGATGAATCC

                    
       7647 CCTCTCTT
          1 CCTCTCTT

            *       
       7655 TCTCTCTT
          1 CCTCTCTT

                    
       7663 CCTCTCTT
          1 CCTCTCTT

                  
       7671 CCTCTC
          1 CCTCTC

       7677 CCTCTCTCAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   8   20  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (8 bp):   
CCTCTCTT
Done.