Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007557.1 Corchorus capsularis cultivar CVL-1 contig07578, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29370

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
245--280
2
18.0
2
100
0
72
50
0
0
50
1.00
8418--8483
32
2.1
31
83
11
80
54
16
18
10
1.70
8193--8540
181
1.9
179
96
1
642
49
21
13
15
1.79
10635--10703
27
2.6
27
92
0
111
15
15
21
46
1.84
13535--13589
20
2.8
20
86
5
76
36
12
16
34
1.87
13581--13820
51
4.7
51
76
6
220
43
3
15
37
1.65
13562--13820
101
2.5
101
86
3
342
42
4
15
36
1.68
14495--14704
56
3.8
56
91
2
300
47
7
19
25
1.75
14550--14639
30
3.1
30
64
23
84
48
8
17
24
1.75
14930--15139
43
5.0
42
78
6
176
53
7
20
18
1.67
14998--15067
20
3.5
20
82
3
77
58
2
20
18
1.51
14921--15097
22
8.3
21
73
10
87
52
5
21
20
1.65
15091--15146
22
2.6
22
86
8
71
57
12
14
16
1.66
14920--15145
21
10.6
21
70
17
128
53
6
20
19
1.67
15164--15206
21
2.0
21
86
0
59
44
6
27
20
1.77
19360--19459
50
2.0
50
98
0
191
27
18
23
32
1.97
22195--22308
57
2.0
57
96
0
210
31
8
21
37
1.84
25495--25592
51
1.9
51
82
0
124
36
4
14
44
1.64
25551--25592
17
2.6
16
81
7
50
35
7
9
47
1.64
27065--27106
22
1.9
22
85
9
59
19
26
26
28
1.98

Tables:   1

The End!