Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007560.1 Corchorus capsularis cultivar CVL-1 contig07581, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12641
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27


Found at i:10048 original size:15 final size:16

Alignment explanation


    Indices: 10020--10049  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

      10010 AAGAAATAGA

                            
      10020 AAAAAGAAAGAGGAAG
          1 AAAAAGAAAGAGGAAG

                           
      10036 AAAAAGAAA-AGGAA
          1 AAAAAGAAAGAGGAA

      10050 AATAACGCCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    5  0.36
  16    9  0.64

ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00


Consensus pattern (16 bp):   
AAAAAGAAAGAGGAAG
Done.