Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007562.1 Corchorus capsularis cultivar CVL-1 contig07583, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18591

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1700--1923
113
2.0
112
97
2
425
34
11
15
38
1.83
2342--2377
18
2.0
18
88
0
54
47
8
13
30
1.73
4295--4322
14
2.0
14
100
0
56
64
21
0
14
1.29
4128--4308
49
3.7
49
99
0
353
40
13
19
26
1.89
6608--6679
27
2.7
27
75
12
69
52
1
4
41
1.29
6938--7234
158
1.9
154
88
4
447
52
5
15
26
1.63
7399--7875
238
2.0
239
91
1
778
33
19
15
31
1.93
8432--8591
60
2.7
60
89
1
241
36
16
19
27
1.93
8428--8624
31
6.5
31
73
13
142
37
17
18
26
1.93
8463--8562
29
3.4
29
72
15
105
34
17
20
29
1.95
8654--8821
31
5.5
31
67
16
136
26
18
21
33
1.96
8653--8817
60
2.7
59
89
3
258
26
18
21
33
1.96
9064--9106
21
2.1
21
87
12
63
55
0
0
44
0.99
9047--9104
21
2.6
23
76
23
61
60
1
1
36
1.17
9108--9133
2
13.0
2
100
0
52
50
0
0
50
1.00
10187--10236
21
2.4
20
87
9
73
38
0
0
62
0.96
10176--10237
19
3.0
20
79
11
63
45
1
0
53
1.10
12801--13234
167
2.6
163
81
7
507
29
13
14
41
1.84
13644--13675
5
6.2
5
96
3
55
21
0
0
78
0.76
15641--15769
2
70.0
2
68
18
75
51
1
0
47
1.10
15632--15763
9
13.5
11
68
20
62
50
1
0
48
1.10
15624--15683
29
2.1
29
84
6
77
51
1
0
46
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15638--15761
13
10.0
13
73
14
86
50
1
0
48
1.10
18329--18409
42
1.9
42
87
0
117
38
16
20
24
1.92

Tables:   1

The End!