Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007567.1 Corchorus capsularis cultivar CVL-1 contig07588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34042

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1049--1433
98
3.9
98
91
2
601
34
14
14
36
1.87
1049--1433
201
1.9
196
90
4
601
34
14
14
36
1.87
2019--2343
180
1.8
179
91
0
533
34
17
26
21
1.95
3334--3507
91
1.9
94
85
11
250
41
8
11
37
1.72
3271--3538
91
2.9
90
74
19
229
42
8
10
38
1.71
4740--4787
23
2.1
23
100
0
96
27
16
8
47
1.75
5446--5503
28
2.1
28
96
0
107
34
15
8
41
1.78
21742--21822
30
2.8
29
79
11
103
29
7
14
48
1.71
25590--25809
109
2.0
109
86
1
307
31
16
12
39
1.86
30166--30205
2
19.5
2
94
5
71
47
2
0
50
1.14
33895--33946
26
2.1
26
85
7
72
38
9
1
50
1.46

Tables:   1

The End!