Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007569.1 Corchorus capsularis cultivar CVL-1 contig07590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39873

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
526--1127
22
27.9
22
67
14
188
33
16
9
39
1.82
789--899
46
2.5
44
86
5
150
33
18
9
38
1.83
1013--1061
20
2.5
20
93
0
80
28
18
8
44
1.78
2685--2734
26
2.0
25
88
7
75
54
10
16
20
1.70
4580--4657
31
2.5
32
85
6
106
51
3
14
30
1.60
5079--5122
2
21.5
2
90
4
70
45
4
0
50
1.22
5215--5509
109
2.7
109
91
4
457
37
10
1
50
1.46
9406--9678
133
2.1
133
99
0
537
28
7
23
40
1.81
10663--10697
5
7.0
5
90
0
52
0
45
0
54
0.99
10660--10697
15
2.4
16
91
4
60
0
44
0
55
0.99
13501--13540
21
1.9
21
89
0
62
25
25
10
40
1.86
13677--13716
21
1.9
21
84
0
53
42
0
0
57
0.98
13945--14106
80
2.0
80
92
0
270
45
10
27
16
1.80
14927--14975
25
2.0
25
88
8
73
38
0
0
61
0.96
14898--14977
22
3.5
24
73
22
73
37
0
2
60
1.11
21694--21763
27
2.5
28
88
2
97
41
15
17
25
1.89
25239--25288
24
2.1
24
100
0
100
50
22
12
16
1.77
28920--28962
1
43.0
1
95
0
68
4
0
0
95
0.27
28917--28962
17
2.8
17
93
6
78
8
0
0
91
0.43
39241--39453
71
3.0
71
93
1
365
37
26
10
26
1.88

Tables:   1

The End!