Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000757.1 Corchorus capsularis cultivar CVL-1 contig00757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30


Found at i:829 original size:24 final size:27

Alignment explanation


    Indices: 779--831  Score: 76
    Period size: 26  Copynumber: 2.1  Consensus size: 27

        769 AGGATGAAAT

                                       
        779 TCCTCCTTATTTTCCTTCTCTTGATTC
          1 TCCTCCTTATTTTCCTTCTCTTGATTC

                    *                  
        806 TCCTCC-TCTTTTCCTTC-CTT-ATTC
          1 TCCTCCTTATTTTCCTTCTCTTGATTC

              
        830 TC
          1 TC

        832 ATCACTGAAG


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  24    6  0.24
  25    3  0.12
  26   10  0.40
  27    6  0.24

ACGTcount: A:0.06, C:0.38, G:0.02, T:0.55


Consensus pattern (27 bp):   
TCCTCCTTATTTTCCTTCTCTTGATTC
Done.