Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007570.1 Corchorus capsularis cultivar CVL-1 contig07591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21019
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:2978 original size:27 final size:28
Alignment explanation
Indices: 2944--3011 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
2934 ATCCTAGGGA
2944 ACTAGCTTTGAATGGGA-AACTGT-TCTG
1 ACTAGCTTTGAATGGGAGAACTGTCT-TG
2971 ACTAGCTTTGAAT-GGAGAACTGTCTTG
1 ACTAGCTTTGAATGGGAGAACTGTCTTG
* *
2998 ACTAACTTGGAATG
1 ACTAGCTTTGAATG
3012 AGAGTCTGAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
26 3 0.08
27 32 0.89
28 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (28 bp):
ACTAGCTTTGAATGGGAGAACTGTCTTG
Found at i:5360 original size:28 final size:28
Alignment explanation
Indices: 5329--5395 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
5319 AAATATTTAC
*
5329 ATAAAAAAGTAATTGACAATAAAGATTT
1 ATAAAAAAATAATTGACAATAAAGATTT
5357 ATAAAAAAATAATTGACAATAAAGATTT
1 ATAAAAAAATAATTGACAATAAAGATTT
5385 ATAAAAAAATA
1 ATAAAAAAATA
5396 GTAATTAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (28 bp):
ATAAAAAAATAATTGACAATAAAGATTT
Found at i:5393 original size:30 final size:29
Alignment explanation
Indices: 5317--5393 Score: 111
Period size: 28 Copynumber: 2.7 Consensus size: 29
5307 AGAAGTTAAG
* * *
5317 ATAAATATTTACATAAAAAAGTAATTGACA
1 ATAAAGATTTATA-AAAAAAATAATTGACA
5347 ATAAAGATTTAT-AAAAAAATAATTGACA
1 ATAAAGATTTATAAAAAAAATAATTGACA
5375 ATAAAGATTTATAAAAAAA
1 ATAAAGATTTATAAAAAAA
5394 TAGTAATTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 27 0.63
29 6 0.14
30 10 0.23
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (29 bp):
ATAAAGATTTATAAAAAAAATAATTGACA
Found at i:7777 original size:86 final size:86
Alignment explanation
Indices: 7670--7841 Score: 335
Period size: 86 Copynumber: 2.0 Consensus size: 86
7660 TATTATTAAG
*
7670 GGTAAAGTAGTATATTTATATTTATTTTTTTTATTTATGAAATTCATGCGCAATTCCATTTCTGA
1 GGTAAAGTAGTATATTTATATTTATTTTTTTTATTTATGAAATTCATGCGCAATTCCATCTCTGA
7735 ACCAAACTTATGAAATAACAA
66 ACCAAACTTATGAAATAACAA
7756 GGTAAAGTAGTATATTTATATTTATTTTTTTTATTTATGAAATTCATGCGCAATTCCATCTCTGA
1 GGTAAAGTAGTATATTTATATTTATTTTTTTTATTTATGAAATTCATGCGCAATTCCATCTCTGA
7821 ACCAAACTTATGAAATAACAA
66 ACCAAACTTATGAAATAACAA
7842 TTTAATTCCT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.41
Consensus pattern (86 bp):
GGTAAAGTAGTATATTTATATTTATTTTTTTTATTTATGAAATTCATGCGCAATTCCATCTCTGA
ACCAAACTTATGAAATAACAA
Found at i:8671 original size:31 final size:32
Alignment explanation
Indices: 8608--8683 Score: 100
Period size: 31 Copynumber: 2.4 Consensus size: 32
8598 GGCATTTACC
*
8608 GAAGAAAACGCCATAGAGTATGAGTGTTTATT
1 GAAGAAAACGCCATAGAGTATGAGCGTTTATT
* *
8640 GAAGAAAACGCCTTAGAGTA-GGGCGTTTATT
1 GAAGAAAACGCCATAGAGTATGAGCGTTTATT
* *
8671 GAACAAAATGCCA
1 GAAGAAAACGCCA
8684 CTATTTTTGG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
31 19 0.50
32 19 0.50
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (32 bp):
GAAGAAAACGCCATAGAGTATGAGCGTTTATT
Found at i:11985 original size:28 final size:29
Alignment explanation
Indices: 11945--12023 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 29
11935 GTTTTACAAA
* **
11945 ATAATATATATATATATATATGTATTAT-
1 ATAATATATATATATATATATATAACATC
11973 ATAATATATATATATA-ATATATAACATC
1 ATAATATATATATATATATATATAACATC
*
12001 ACAATATATATATATATATATAT
1 ATAATATATATATATATATATAT
12024 TATAATATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 8 0.18
28 31 0.69
29 6 0.13
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (29 bp):
ATAATATATATATATATATATATAACATC
Found at i:12042 original size:2 final size:2
Alignment explanation
Indices: 11948--12034 Score: 89
Period size: 2 Copynumber: 46.5 Consensus size: 2
11938 TTACAAAATA
*
11948 AT AT AT AT AT AT AT AT AT GT AT -T AT AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
11988 A- AT AT AT A- AC AT CAC A- AT AT AT AT AT AT AT AT AT AT -T AT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12027 A- AT AT AT A
1 AT AT AT AT A
12035 AAATATATTT
Statistics
Matches: 73, Mismatches: 4, Indels: 16
0.78 0.04 0.17
Matches are distributed among these distances:
1 7 0.10
2 65 0.89
3 1 0.01
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (2 bp):
AT
Found at i:16693 original size:22 final size:22
Alignment explanation
Indices: 16668--16950 Score: 126
Period size: 22 Copynumber: 13.1 Consensus size: 22
16658 CAATTGTTAG
*
16668 TAATCACACTCTGAAATTTTGA
1 TAATCACACTATGAAATTTTGA
*
16690 TAATCACACTATGAAATTGTGA
1 TAATCACACTATGAAATTTTGA
* * *
16712 TAACCTCGCTATGAAATTTTGA
1 TAATCACACTATGAAATTTTGA
* *
16734 TTAATCTTC-CTATAAAATTTTGA
1 -TAATC-ACACTATGAAATTTTGA
16757 TAAACCTC-CA-TAT-AAATTTTGA
1 T-AA--TCACACTATGAAATTTTGA
** * *
16779 TAACTTTC-TTATGAAATCTTG-
1 TAA-TCACACTATGAAATTTTGA
*
16800 --AT-A-ACTA-CAAATTTTGA
1 TAATCACACTATGAAATTTTGA
* * * **
16817 TAACCTCCCTATGATTTTTTGA
1 TAATCACACTATGAAATTTTGA
* * * *
16839 TAACCTCATTATGAAATTTTGT
1 TAATCACACTATGAAATTTTGA
* *
16861 TAATCTCCCTATGAAATTTTGA
1 TAATCACACTATGAAATTTTGA
* *
16883 T-CTGCATACTATGAAATTTTGA
1 TAAT-CACACTATGAAATTTTGA
* *
16905 TAA-CCCTCTTATGAAATTTTGA
1 TAATCACAC-TATGAAATTTTGA
* *
16927 -AAACTAAACTATGAAATTTTGA
1 TAATC-ACACTATGAAATTTTGA
16949 TA
1 TA
16951 TCCTCCCTGA
Statistics
Matches: 199, Mismatches: 40, Indels: 43
0.71 0.14 0.15
Matches are distributed among these distances:
16 7 0.04
17 2 0.01
18 1 0.01
19 2 0.01
20 2 0.01
21 14 0.07
22 142 0.71
23 25 0.13
24 2 0.01
25 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (22 bp):
TAATCACACTATGAAATTTTGA
Found at i:16752 original size:45 final size:46
Alignment explanation
Indices: 16679--16779 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 46
16669 AATCACACTC
*
16679 TGAAATTTTGA-TAATCACACTATGAAATTGTGAT-AACCTCGC-TA
1 TGAAATTTTGATTAATCACACTATAAAATTGTGATAAACCTC-CATA
* *
16723 TGAAATTTTGATTAATCTTC-CTATAAAATTTTGATAAACCTCCATA
1 TGAAATTTTGATTAATC-ACACTATAAAATTGTGATAAACCTCCATA
16769 T-AAATTTTGAT
1 TGAAATTTTGAT
16780 AACTTTCTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
44 11 0.22
45 29 0.58
46 10 0.20
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.40
Consensus pattern (46 bp):
TGAAATTTTGATTAATCACACTATAAAATTGTGATAAACCTCCATA
Found at i:16915 original size:126 final size:127
Alignment explanation
Indices: 16681--16932 Score: 310
Period size: 126 Copynumber: 2.0 Consensus size: 127
16671 TCACACTCTG
* * *
16681 AAATTTTGATAATCACACTATGAAATTGTGATAACCTCGCTATGAAATTTTGATTAATCTTCCTA
1 AAATTTTGATAACCACACTATGAAATTGTGATAACCTCACTATGAAATTTTGATTAATCTCCCTA
* * ** *
16746 TAAAATTTTGATAAACCTCCATATAAATTTTGATAACTTTCTTATGAAATCTTGATAACTAC
66 TAAAATTTTGATAAACATACATATAAATTTTGATAACCCTCTTATGAAATCTTGAAAACTAC
* * ** * *
16808 AAATTTTGATAACCTCCCTATGATTTTTTGATAACCTCATTATGAAATTTTG-TTAATCTCCCTA
1 AAATTTTGATAACCACACTATGAAATTGTGATAACCTCACTATGAAATTTTGATTAATCTCCCTA
* *** *
16872 TGAAATTTTGATCTGCATAC-TATGAAATTTTGATAACCCTCTTATGAAATTTTGAAAACTA
66 TAAAATTTTGATAAACATACATAT-AAATTTTGATAACCCTCTTATGAAATCTTGAAAACTA
16933 AACTATGAAA
Statistics
Matches: 105, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
125 3 0.03
126 58 0.55
127 44 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.40
Consensus pattern (127 bp):
AAATTTTGATAACCACACTATGAAATTGTGATAACCTCACTATGAAATTTTGATTAATCTCCCTA
TAAAATTTTGATAAACATACATATAAATTTTGATAACCCTCTTATGAAATCTTGAAAACTAC
Found at i:17168 original size:66 final size:66
Alignment explanation
Indices: 17063--17198 Score: 157
Period size: 66 Copynumber: 2.1 Consensus size: 66
17053 GAAATTTTTG
* * * * ** *
17063 TAATCACATTCTGAAAATTTGATAACCTCTTTATAAAATTTTGTTGACCCCTCTATGAAATTCTG
1 TAATCACATTATGAAAATTTGATAACCTCCTTATAAAATTTTGGTAACAACACTATGAAATTCTG
17128 A
66 A
* * * *
17129 TAATCACATTATGTAATTTTGATAACCTCGCTT-TGAAATTTTGGTAACAACACTATGAAATTTT
1 TAATCACATTATGAAAATTTGATAACCTC-CTTATAAAATTTTGGTAACAACACTATGAAATTCT
17193 GA
65 GA
17195 TAAT
1 TAAT
17199 TTGATCTCTA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
66 56 0.97
67 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (66 bp):
TAATCACATTATGAAAATTTGATAACCTCCTTATAAAATTTTGGTAACAACACTATGAAATTCTG
A
Found at i:17232 original size:22 final size:22
Alignment explanation
Indices: 17113--17238 Score: 94
Period size: 22 Copynumber: 5.6 Consensus size: 22
17103 TTGTTGACCC
*
17113 CTCTATGAAATTCTGATAATCA
1 CTCTATGAAATTTTGATAATCA
* * *
17135 CAT-TATGTAATTTTGATAACCT
1 C-TCTATGAAATTTTGATAATCA
* * *
17157 CGCTTTGAAATTTTGGTAA-CAA
1 CTCTATGAAATTTTGATAATC-A
* *
17179 CACTATGAAATTTTGATAATTTGA
1 CTCTATGAAATTTTGATAA--TCA
*
17203 TCTCTATGAAATTTCGATAATCA
1 -CTCTATGAAATTTTGATAATCA
*
17226 CTCTATGAGATTT
1 CTCTATGAAATTT
17239 AATAACCTTC
Statistics
Matches: 80, Mismatches: 17, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
21 1 0.01
22 58 0.73
23 3 0.04
24 1 0.01
25 17 0.21
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (22 bp):
CTCTATGAAATTTTGATAATCA
Found at i:17312 original size:22 final size:22
Alignment explanation
Indices: 17283--17640 Score: 153
Period size: 22 Copynumber: 16.5 Consensus size: 22
17273 AAATTGAGAC
17283 TTTT-ATAACCTTCA-TATGAAA
1 TTTTGATAACC-TCACTATGAAA
*
17304 TTTTGATAACCAT-ACTATAAAA
1 TTTTGATAACC-TCACTATGAAA
* *
17326 TTTTGATAACCTCCCCATGAAA
1 TTTTGATAACCTCACTATGAAA
*
17348 TATT-AGTAACCTC-CTAATGAAA
1 TTTTGA-TAACCTCACT-ATGAAA
* *
17370 TTTTGTTAACCACACTATGAAA
1 TTTTGATAACCTCACTATGAAA
*
17392 TTCTT-ATAACCTCACTATGACA
1 TT-TTGATAACCTCACTATGAAA
* *
17414 TTTTGATAA--TCTCTTTGATAA
1 TTTTGATAACCTCACTATGA-AA
* * *
17435 CCTTTCT-ATAA---AATTGTGAAA
1 --TTT-TGATAACCTCACTATGAAA
* * *
17456 --AT--TAACCACCCTATGAAA
1 TTTTGATAACCTCACTATGAAA
** * *
17474 TTTCAATAACC-AACTTAAGAAA
1 TTTTGATAACCTCAC-TATGAAA
* *
17496 TTTTAATAACCTGATCCTATGAAA
1 TTTTGATAACCTCA--CTATGAAA
* ** *
17520 TTTTGGTTTCCACACTATGAAA
1 TTTTGATAACCTCACTATGAAA
*
17542 TTTTGATAACTTC-CATATGAAA
1 TTTTGATAACCTCAC-TATGAAA
* * *
17564 TTTTGGTAACCACACTATGGAA
1 TTTTGATAACCTCACTATGAAA
17586 TTTTGATAACCTC-CTCATGAAA
1 TTTTGATAACCTCACT-ATGAAA
* * *
17608 TTATAATAACCATC-TTATGAAA
1 TTTTGATAACC-TCACTATGAAA
17630 TTTTGATAACC
1 TTTTGATAACC
17641 ACATAGAGAC
Statistics
Matches: 253, Mismatches: 56, Indels: 55
0.70 0.15 0.15
Matches are distributed among these distances:
15 3 0.01
16 1 0.00
18 6 0.02
20 7 0.03
21 17 0.07
22 187 0.74
23 16 0.06
24 15 0.06
25 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (22 bp):
TTTTGATAACCTCACTATGAAA
Found at i:17346 original size:44 final size:44
Alignment explanation
Indices: 17098--17640 Score: 196
Period size: 44 Copynumber: 12.3 Consensus size: 44
17088 CCTCTTTATA
* * * * * *
17098 AAATTTTGTTGACC-CCTCTATGAAATTCTGATAATCACATTATG
1 AAATTTTGATAACCTCC-CTATGAAATTTTGATAACCATACTATG
* * * * * *
17142 TAATTTTGATAACCTCGCTTTGAAATTTTGGTAACAACACTATG
1 AAATTTTGATAACCTCCCTATGAAATTTTGATAACCATACTATG
** * * *
17186 AAATTTTGATAATTTGATCTCTATGAAATTTCGATAATCACT-CTATG
1 AAATTTTGATAA---CCTCCCTATGAAATTTTGATAACCA-TACTATG
* * * * * * *
17233 AGA-TTTAATAACCT-TCTATCAAATTTTGGTACTCCTTATGA-AATTG
1 AAATTTTGATAACCTCCCTATGAAATTTTGATA-ACC--AT-ACTA-TG
* * * *
17279 AGACTTTT-ATAACCTTCATATGAAATTTTGATAACCATACTATA
1 A-AATTTTGATAACCTCCCTATGAAATTTTGATAACCATACTATG
* * *
17323 AAATTTTGATAACCTCCCCATGAAATATT-AGTAACC-TCCTAATG
1 AAATTTTGATAACCTCCCTATGAAATTTTGA-TAACCATACT-ATG
* * *
17367 AAATTTTGTTAACCACACTATGAAATTCTT-ATAACC-TCACTATG
1 AAATTTTGATAACCTCCCTATGAAATT-TTGATAACCAT-ACTATG
* * * * *
17411 ACATTTTGATAA--T--C--T----CTTTGATAACCTTTCTATA
1 AAATTTTGATAACCTCCCTATGAAATTTTGATAACCATACTATG
* * ** *
17445 AAATTGTGAAAATTAACCACCCTATGAAATTTCAATAACCA-ACTTAAG
1 AAATTTTG---A-TAACCTCCCTATGAAATTTTGATAACCATAC-TATG
* * * ** *
17493 AAATTTTAATAACCTGATCCTATGAAATTTTGGTTTCCACACTATG
1 AAATTTTGATAACCT--CCCTATGAAATTTTGATAACCATACTATG
* * * *
17539 AAATTTTGATAACTTCCATATGAAATTTTGGTAACCACACTATG
1 AAATTTTGATAACCTCCCTATGAAATTTTGATAACCATACTATG
* * *
17583 GAATTTTGATAACCT-CCTCATGAAATTATAATAACCAT-CTTATG
1 AAATTTTGATAACCTCCCT-ATGAAATTTTGATAACCATAC-TATG
17627 AAATTTTGATAACC
1 AAATTTTGATAACC
17641 ACATAGAGAC
Statistics
Matches: 365, Mismatches: 92, Indels: 84
0.67 0.17 0.16
Matches are distributed among these distances:
33 2 0.01
34 17 0.05
35 1 0.00
37 1 0.00
38 4 0.01
40 1 0.00
42 15 0.04
43 14 0.04
44 188 0.52
45 12 0.03
46 42 0.12
47 36 0.10
48 32 0.09
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (44 bp):
AAATTTTGATAACCTCCCTATGAAATTTTGATAACCATACTATG
Found at i:17996 original size:15 final size:15
Alignment explanation
Indices: 17978--18024 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
17968 TATATAATCT
17978 AATAATTAATAATGG
1 AATAATTAATAATGG
* *
17993 AATAATTTATAAT-T
1 AATAATTAATAATGG
18007 AA-AA-TAATAATGG
1 AATAATTAATAATGG
18020 AATAA
1 AATAA
18025 AAATACTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 4 0.15
15 12 0.46
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (15 bp):
AATAATTAATAATGG
Found at i:18096 original size:30 final size:32
Alignment explanation
Indices: 18051--18116 Score: 100
Period size: 31 Copynumber: 2.1 Consensus size: 32
18041 TGGTAATTTA
*
18051 GAAATATGATTTTAAAAA-AAGGGTACAATTG
1 GAAATATGATTTTAAAAATAAGGGTACAATCG
*
18082 GAAATATG-TTTTAAAAATAAGGGTATAATCG
1 GAAATATGATTTTAAAAATAAGGGTACAATCG
18113 GAAA
1 GAAA
18117 ACATAAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 9 0.28
31 23 0.72
ACGTcount: A:0.48, C:0.03, G:0.20, T:0.29
Consensus pattern (32 bp):
GAAATATGATTTTAAAAATAAGGGTACAATCG
Found at i:18955 original size:29 final size:27
Alignment explanation
Indices: 18882--18973 Score: 112
Period size: 27 Copynumber: 3.3 Consensus size: 27
18872 ATTCCCAAGC
18882 CTCACCTAACTTGGAGCTTCTTTGAGG
1 CTCACCTAACTTGGAGCTTCTTTGAGG
* * *
18909 CTCACCTAACCTGAAGCTTCTTTGAGCCT
1 CTCACCTAACTTGGAGCTTCTTTGAG--G
* *
18938 CTCACATAACTTGGAGCTTCTTTTAGG
1 CTCACCTAACTTGGAGCTTCTTTGAGG
*
18965 TTCACCTAA
1 CTCACCTAA
18974 AACTCTAGAC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
27 31 0.58
29 22 0.42
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (27 bp):
CTCACCTAACTTGGAGCTTCTTTGAGG
Found at i:20782 original size:21 final size:21
Alignment explanation
Indices: 20758--20806 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
20748 CAACTGGGGG
* * *
20758 CCCATGTGGTATGCTTGGCGC
1 CCCATGTGGTATGCCTCGCGA
*
20779 CCCATGTGGTTTGCCTCGCGA
1 CCCATGTGGTATGCCTCGCGA
20800 CCCATGT
1 CCCATGT
20807 CCTCCAGTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.10, C:0.33, G:0.29, T:0.29
Consensus pattern (21 bp):
CCCATGTGGTATGCCTCGCGA
Done.