genome.fa.s7573.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007573.1 Corchorus capsularis cultivar CVL-1 contig07594, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134005

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543--603	32	1.9	32	93	0	104	36	14	9	39	1.80
667--1060	44	9.7	43	75	16	412	35	15	9	38	1.81
492--1078	80	7.3	80	89	5	835	35	16	9	38	1.81
717--776	19	3.3	19	66	17	54	36	15	10	38	1.80
976--1077	9	11.6	8	68	13	51	36	15	6	41	1.74
4811--4839	12	2.3	13	94	5	51	17	31	0	51	1.45
10100--10130	12	2.6	12	89	0	53	22	41	0	35	1.54
23067--23126	21	2.9	21	79	0	66	30	18	11	40	1.86
24706--24826	27	4.7	27	70	13	103	47	5	8	38	1.57
24707--24893	75	2.5	74	87	4	261	48	4	9	36	1.57
27058--27090	14	2.3	15	89	5	50	51	3	0	45	1.16
27293--27319	4	6.8	4	100	0	54	77	0	0	22	0.76
28256--28410	74	2.1	74	98	0	301	41	5	20	32	1.75
32930--33112	89	2.0	90	94	1	323	48	21	2	27	1.63
33038--33180	68	2.1	68	94	0	259	51	20	0	27	1.53
35531--35572	3	14.0	3	90	9	68	66	0	30	2	1.04
44352--44380	14	2.1	14	100	0	58	65	13	6	13	1.45
44480--44516	13	2.9	13	81	18	51	86	2	10	0	0.67
57331--57480	61	2.5	61	89	2	214	35	14	19	30	1.92
60681--60714	12	2.8	12	95	0	59	17	38	26	17	1.92
60700--60794	31	3.1	31	85	0	91	18	20	25	35	1.95
60744--60846	53	1.9	53	88	0	152	17	18	26	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62238--62575	27	12.4	27	74	7	220	25	27	25	21	1.99
62758--62847	38	2.3	38	84	7	108	22	31	17	28	1.97
63700--63839	48	2.9	48	82	0	154	36	27	15	20	1.93
72108--72217	55	2.0	55	100	0	220	29	29	12	29	1.93
72440--72478	21	1.9	19	85	10	51	0	33	2	64	1.08
72731--72760	15	2.0	15	93	0	51	16	26	23	33	1.96
76260--76305	24	2.0	22	87	8	65	52	0	0	47	1.00
76263--76309	25	1.9	24	87	12	69	53	0	0	46	1.00
91875--91935	6	10.2	6	90	0	77	11	0	54	34	1.37
91875--91939	18	3.6	18	87	0	85	10	0	53	35	1.36
91875--91945	12	5.9	12	89	0	79	11	0	53	35	1.37
91895--91945	6	8.5	6	95	0	66	7	0	56	35	1.28
93767--93878	56	2.0	56	89	6	174	30	25	8	35	1.86
94977--95009	17	1.9	17	100	0	66	27	6	36	30	1.81
97640--97708	34	2.0	34	88	5	104	31	11	7	49	1.66
101423--101447	9	2.8	9	100	0	50	36	0	24	40	1.55
106133--106516	184	2.1	183	81	6	449	36	16	17	29	1.92
114841--114872	11	2.9	11	90	0	55	43	18	0	37	1.51
116260--116301	21	2.0	21	86	9	59	42	23	9	23	1.83
119217--119252	15	2.4	15	95	0	63	69	5	8	16	1.33
119270--119300	6	5.3	6	96	3	55	51	12	0	35	1.40
120667--120698	11	2.9	11	90	0	55	43	18	0	37	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122633--122751	30	4.2	31	68	23	84	40	26	13	19	1.89
122545--122721	52	3.3	52	87	7	214	38	27	13	20	1.90
126297--126355	31	1.9	31	89	0	91	42	30	16	10	1.82
127093--127356	129	2.0	131	86	6	372	48	2	14	35	1.56
133012--133053	20	2.1	20	90	0	66	9	23	16	50	1.75
133517--133635	32	3.7	32	87	1	148	12	36	31	19	1.89
133816--133857	17	2.5	17	81	18	52	50	4	2	42	1.36

Tables:   1

The End!