Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007576.1 Corchorus capsularis cultivar CVL-1 contig07597, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112751

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
806--832
2
13.5
2
100
0
54
48
0
0
51
1.00
2147--2181
3
11.7
3
100
0
70
0
31
0
68
0.90
4719--4753
1
35.0
1
100
0
70
100
0
0
0
0.00
8300--8371
23
3.1
23
83
13
94
29
1
1
68
1.07
8503--8569
31
2.2
30
81
7
73
32
22
16
28
1.95
10672--10720
11
4.3
11
76
7
53
48
0
2
48
1.12
10735--10780
17
2.9
16
81
12
51
43
0
2
54
1.12
19140--19320
38
4.7
38
93
2
299
23
20
37
19
1.95
20636--20687
26
2.1
24
82
13
61
46
26
7
19
1.77
27746--27832
40
2.2
40
82
2
102
60
2
19
17
1.46
27811--27992
25
7.8
25
69
21
119
51
3
22
23
1.63
27809--27943
42
3.2
42
89
4
191
51
3
21
22
1.63
27878--27914
17
2.2
17
90
4
58
54
2
18
24
1.57
27891--27993
26
4.0
24
82
10
116
50
0
25
23
1.55
27975--28026
16
3.2
16
75
5
59
51
3
17
26
1.62
28025--28100
19
3.7
19
73
20
64
61
2
17
18
1.45
44059--44087
2
14.5
2
100
0
58
51
0
0
48
1.00
46499--46549
22
2.2
24
83
16
72
41
0
0
58
0.98
46499--46547
25
2.0
25
84
8
64
40
0
0
59
0.98
47797--47872
38
2.0
38
89
0
116
22
15
28
32
1.95
48930--49977
523
2.0
523
99
0
2087
29
21
21
27
1.98
51033--51083
2
25.5
2
95
0
93
50
1
0
47
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52679--52713
3
11.7
3
100
0
70
68
0
0
31
0.90
56363--56423
23
2.7
23
80
12
72
36
24
9
29
1.88
59432--59457
4
6.5
4
100
0
52
76
0
0
23
0.78
66311--66346
18
2.0
18
94
0
63
52
11
2
33
1.51
102805--102903
33
2.9
34
82
4
112
27
19
27
26
1.99
108406--108472
34
2.0
34
90
0
107
43
19
1
35
1.60
108513--108688
84
2.1
85
93
2
300
44
6
14
35
1.70
110384--110485
30
3.4
30
71
20
88
18
12
29
39
1.88
110434--110565
54
2.5
54
93
2
223
20
14
26
38
1.91

Tables:   1

The End!