Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007577.1 Corchorus capsularis cultivar CVL-1 contig07598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36079

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9060--9094
17
2.1
17
94
0
61
11
8
17
62
1.52
11795--11844
21
2.4
21
86
0
64
12
36
26
26
1.91
13718--13761
13
3.3
13
81
9
54
6
18
0
75
1.02
15917--15961
21
2.1
21
95
0
81
22
17
31
28
1.97
17647--17722
27
2.8
27
85
0
107
39
23
15
21
1.92
19491--19531
20
2.0
22
85
9
59
73
4
9
12
1.24
19490--19539
21
2.3
23
80
19
63
68
4
14
14
1.36
20349--20373
10
2.5
10
100
0
50
48
20
8
24
1.76
21320--21353
6
5.5
6
93
6
59
32
0
14
52
1.42
27439--27800
48
7.5
48
70
10
229
26
24
16
32
1.96
27431--27754
97
3.3
96
80
6
314
24
25
16
33
1.96
27431--27789
193
1.9
193
82
4
456
25
24
15
33
1.95
29725--29765
3
13.7
3
94
0
73
0
29
0
70
0.87
34141--34421
70
4.0
70
86
0
382
35
21
20
22
1.96
34501--34681
70
2.6
70
90
0
281
37
22
16
23
1.93
34233--34942
260
2.7
261
93
0
1206
39
23
16
20
1.92
34167--35113
331
2.9
330
81
5
1022
38
23
17
20
1.93
34770--35013
71
3.5
70
93
1
382
38
20
18
22
1.93
35007--35107
36
2.8
36
80
1
123
41
25
17
14
1.88
34994--35100
35
3.0
35
77
2
115
40
26
15
17
1.90

Tables:   1

The End!