Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007579.1 Corchorus capsularis cultivar CVL-1 contig07600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16466

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5630--5709
42
1.9
42
89
5
126
42
7
27
22
1.80
7533--7557
8
3.1
8
100
0
50
48
0
24
28
1.52
7631--7668
16
2.4
16
86
8
51
63
7
2
26
1.35
9229--9314
45
1.9
45
90
4
138
25
20
17
36
1.95
10472--10519
25
1.9
25
87
8
71
37
0
0
62
0.95
11333--11359
13
2.1
13
100
0
54
44
14
7
33
1.73
14318--14373
22
2.6
21
81
10
69
41
10
5
42
1.62
14388--14901
22
23.6
22
67
13
140
35
14
9
39
1.80
14694--14756
23
2.7
23
90
0
90
39
12
6
41
1.69
14914--14963
19
2.5
20
77
6
57
28
18
12
42
1.85
15011--15186
78
2.3
78
96
0
325
35
17
9
38
1.81
15147--15538
22
17.6
22
68
12
106
35
16
8
39
1.80
15122--15288
88
1.9
88
81
2
201
34
14
8
42
1.77
15581--15639
22
2.6
22
78
5
64
38
18
8
33
1.81

Tables:   1

The End!