Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007581.1 Corchorus capsularis cultivar CVL-1 contig07602, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13722
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:13564 original size:12 final size:13

Alignment explanation


    Indices: 13539--13563  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      13529 AATTCCGTTG

                         
      13539 TTAGAAAAAAAAA
          1 TTAGAAAAAAAAA

                        
      13552 TTAGAAAAAAAA
          1 TTAGAAAAAAAA

      13564 TAAATAGCCA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16


Consensus pattern (13 bp):   
TTAGAAAAAAAAA
Done.