Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007585.1 Corchorus capsularis cultivar CVL-1 contig07606, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59211

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
604--633
15
2.0
15
93
0
51
13
10
6
70
1.34
1166--1215
8
6.5
8
79
2
50
0
20
0
80
0.72
1171--1212
16
2.7
16
88
3
59
0
21
0
78
0.75
1518--1568
26
2.0
26
84
7
68
13
15
1
68
1.30
1898--2041
45
3.2
46
93
4
240
38
22
6
31
1.79
2137--2165
3
9.7
3
100
0
58
0
31
0
68
0.89
7525--7800
37
7.7
37
70
16
206
48
6
17
28
1.71
7511--7830
71
4.5
71
93
0
525
48
5
17
28
1.70
7511--7760
34
7.1
34
72
19
217
49
5
17
28
1.68
7511--7867
142
2.5
141
89
4
454
49
5
17
27
1.68
8050--8096
16
3.0
15
79
14
51
61
0
19
19
1.34
8145--8232
40
2.1
44
81
8
103
56
4
17
21
1.58
8194--8289
16
6.3
16
75
15
105
53
2
17
27
1.55
8213--8349
42
3.2
42
85
4
159
49
3
21
24
1.65
8173--8285
58
2.0
57
84
8
149
55
2
15
25
1.53
8252--8289
17
2.2
17
90
0
58
50
2
18
28
1.61
9738--9801
15
4.1
15
75
16
58
45
15
18
20
1.86
9768--9920
50
3.3
49
76
17
189
35
18
20
24
1.95
9768--10054
90
3.3
90
90
5
446
32
19
22
25
1.97
9897--10098
43
4.8
42
81
6
214
30
20
23
25
1.98
9912--10086
83
2.1
83
94
0
305
32
20
23
24
1.98
10146--10272
38
3.3
38
86
0
182
32
18
16
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10272--10425
38
4.1
38
79
1
168
26
18
19
35
1.95
10280--10423
76
1.9
76
85
0
198
25
19
20
34
1.96
11545--11576
17
1.9
17
93
6
57
0
0
12
87
0.54
15460--15488
13
2.1
14
93
6
51
48
10
20
20
1.79
29141--29187
24
2.0
24
83
8
60
14
14
4
65
1.41
34832--34866
9
3.8
9
88
3
52
14
0
2
82
0.77
39661--39704
16
2.8
16
92
0
70
38
38
15
6
1.75
43504--43536
16
2.1
16
88
5
50
48
12
24
15
1.78
50325--50379
6
9.5
6
82
7
69
30
45
20
3
1.68
50325--50379
23
2.4
23
90
0
83
30
45
20
3
1.68
50346--50378
17
1.9
17
100
0
66
30
48
18
3
1.63
50327--50379
11
4.6
11
81
6
61
30
47
18
3
1.67
50348--50442
16
5.9
16
85
8
106
41
40
14
4
1.66
50902--51091
63
3.0
63
94
0
344
38
24
21
16
1.93
52993--53288
109
2.7
109
90
4
432
38
10
1
48
1.48
54777--54920
71
2.0
71
87
2
209
22
20
34
22
1.97
55443--55484
15
2.7
16
88
3
59
33
42
19
4
1.72
59150--59176
4
6.8
4
100
0
54
25
22
0
51
1.48
59174--59207
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!