Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007592.1 Corchorus capsularis cultivar CVL-1 contig07613, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66245

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
331--367
16
2.3
16
90
0
56
5
29
13
51
1.63
2316--2349
2
17.0
2
93
0
59
50
2
0
47
1.16
10753--10806
26
2.1
26
89
0
81
22
12
18
46
1.83
11733--11896
86
1.9
85
86
6
233
38
10
1
50
1.45
11726--11910
86
2.1
84
81
6
228
37
9
1
52
1.41
13709--13746
18
2.1
19
95
5
69
21
31
23
23
1.98
36651--36688
17
2.4
16
86
8
51
2
15
0
81
0.80
42376--42405
13
2.4
12
94
5
51
60
0
0
40
0.97
42771--42860
44
2.0
46
87
10
132
55
6
4
33
1.46
42952--43112
85
1.9
84
89
5
254
52
1
9
36
1.43
43672--43705
16
2.1
16
100
0
68
47
17
23
11
1.81
43857--44116
41
6.3
41
85
1
333
38
18
13
30
1.89
43857--44116
123
2.1
123
89
1
387
38
18
13
30
1.89
43872--44109
82
2.9
82
90
1
370
38
18
13
30
1.88
44376--44595
109
2.0
110
94
0
388
19
16
23
40
1.91
48175--48400
116
1.9
116
88
1
337
17
22
29
30
1.96
49616--49684
32
2.2
32
94
0
120
33
1
8
56
1.39
50528--50555
2
14.0
2
100
0
56
50
0
0
50
1.00
51979--52009
3
10.3
3
100
0
62
67
0
32
0
0.91
52059--52101
21
2.0
22
86
4
61
60
0
0
39
0.97

Tables:   1

The End!