Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007593.1 Corchorus capsularis cultivar CVL-1 contig07614, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37720

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4149--4190
6
7.0
6
100
0
84
66
0
33
0
0.92
6708--6787
41
2.0
40
92
2
133
45
16
13
25
1.84
9186--9237
17
3.1
17
94
5
97
51
23
5
19
1.67
9185--9235
16
3.1
16
94
5
93
50
23
5
19
1.69
19221--19267
2
23.5
2
95
0
85
48
2
0
48
1.13
23306--23334
15
2.0
15
93
6
51
6
13
31
48
1.69
23552--23591
20
2.0
20
100
0
80
40
20
10
30
1.85
25386--25417
9
3.7
9
95
4
57
0
6
0
93
0.34
25388--25417
15
1.9
15
93
6
51
0
6
0
93
0.35
25668--25730
30
2.1
30
87
0
90
38
19
17
25
1.93
25975--25999
1
25.0
1
100
0
50
100
0
0
0
0.00
30372--30399
2
14.0
2
100
0
56
50
0
0
50
1.00
33846--33887
21
2.0
21
95
0
75
19
30
33
16
1.94
33867--33949
33
2.5
33
86
3
114
20
37
31
10
1.87
33867--33962
33
2.9
33
84
3
95
20
39
30
9
1.84
34899--34932
8
4.1
8
85
7
50
58
14
2
23
1.50

Tables:   1

The End!