genome.fa.s7594.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007594.1 Corchorus capsularis cultivar CVL-1 contig07615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46896

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4550--4595	23	2.0	23	87	4	67	17	17	34	30	1.93
5186--5248	31	2.0	31	81	3	72	46	11	14	28	1.78
8672--8710	1	39.0	1	100	0	78	100	0	0	0	0.00
10361--10490	37	3.6	36	74	17	117	45	6	18	29	1.75
10396--10508	34	3.2	35	71	18	99	46	7	18	28	1.75
10347--10508	72	2.3	71	86	5	222	46	6	19	27	1.73
10443--10635	55	3.5	55	98	0	368	46	7	20	25	1.77
10469--10666	55	3.8	51	92	4	258	48	7	18	24	1.74
11366--11399	18	2.0	17	88	11	52	47	5	23	23	1.73
11257--11436	43	4.3	42	78	6	184	50	2	21	25	1.62
13225--13384	86	1.9	86	95	0	293	38	32	7	21	1.81
26137--26165	10	2.9	10	100	0	58	62	0	0	37	0.96
26591--26828	78	3.2	78	85	7	325	37	11	0	50	1.43
26591--26822	70	3.2	69	79	11	259	37	12	0	50	1.43
26695--26847	78	2.1	73	83	9	186	41	11	0	45	1.45
28051--28124	32	2.3	32	83	2	87	14	44	32	8	1.75
28864--28901	2	19.0	2	100	0	76	50	0	0	50	1.00
29047--29101	25	2.3	25	90	6	87	32	20	0	47	1.50
29111--29178	15	5.1	14	70	26	58	52	11	1	33	1.47
29111--29178	26	2.6	26	95	0	118	52	11	1	33	1.47
29395--29438	21	2.2	20	84	12	54	40	11	29	18	1.85
29730--29767	15	2.5	15	91	0	58	42	7	0	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29859--30082	108	2.0	111	86	7	314	38	9	3	48	1.52
30275--30326	26	2.1	26	85	7	72	40	9	0	50	1.35
30196--30524	158	2.1	157	79	8	357	37	10	3	48	1.53
31283--31341	31	1.9	31	89	0	91	25	15	8	50	1.71
32026--32066	16	2.5	17	76	11	50	19	17	26	36	1.94
32577--33043	238	2.0	229	88	5	686	31	14	19	34	1.92
33206--33521	166	1.9	162	85	7	435	25	15	5	53	1.63
35951--35994	21	2.1	21	86	0	61	31	18	2	47	1.61
40912--41070	31	5.4	31	78	13	156	16	23	27	32	1.96
40960--41062	53	1.9	53	90	0	161	16	20	27	35	1.94
45692--45923	117	2.0	116	98	0	446	25	15	20	38	1.92
46686--46795	43	2.6	43	76	11	102	36	33	8	21	1.83

Tables:   1

The End!