Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007597.1 Corchorus capsularis cultivar CVL-1 contig07618, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31209

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
221--297
37
2.1
36
86
11
104
58
11
15
14
1.63
397--462
31
2.1
31
86
5
89
46
4
18
30
1.68
3410--3470
31
2.1
29
85
14
81
39
16
21
22
1.92
4518--4581
31
2.1
31
85
2
85
26
17
28
28
1.97
4875--4902
6
4.7
6
100
0
56
17
14
0
67
1.22
8791--8829
12
3.2
12
81
3
51
79
0
20
0
0.73
9290--9354
34
1.9
34
93
0
112
32
15
13
38
1.87
9451--9481
16
1.9
16
93
0
53
41
0
9
48
1.36
9671--9706
2
18.0
2
100
0
72
50
0
0
50
1.00
9957--10555
299
2.0
299
100
0
1198
27
13
20
38
1.90
15386--15447
28
2.2
28
97
2
117
40
16
9
33
1.81
17364--17398
13
2.7
13
95
0
61
20
11
8
60
1.57
17395--17421
6
4.5
6
100
0
54
29
0
14
55
1.40
23582--23606
10
2.5
10
100
0
50
48
20
8
24
1.76
24522--24556
13
2.7
13
90
0
52
20
14
8
57
1.63

Tables:   1

The End!