Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007600.1 Corchorus capsularis cultivar CVL-1 contig07621, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39766

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--73
33
2.2
33
85
5
92
13
40
31
13
1.85
17--97
33
2.5
32
80
6
90
13
39
33
13
1.84
138--254
32
3.6
32
91
1
162
11
29
41
16
1.84
284--401
57
2.1
58
93
1
202
43
8
33
15
1.77
1278--1326
22
2.2
22
85
7
64
28
14
4
53
1.59
1383--1437
22
2.5
22
81
3
65
40
14
12
32
1.84
1487--1612
23
5.6
23
79
9
102
36
14
9
39
1.78
1511--1612
46
2.2
45
84
5
125
36
14
8
40
1.77
3380--3691
22
14.5
22
69
14
143
36
15
9
39
1.80
3419--3503
23
3.7
23
80
1
91
38
14
5
41
1.70
3666--3729
19
3.3
19
91
2
101
21
21
12
43
1.86
3835--3886
22
2.4
22
90
3
79
42
9
7
40
1.66
3842--4127
22
13.0
22
69
17
125
33
13
9
43
1.76
3965--4186
21
9.7
23
71
20
139
35
13
9
42
1.75
3965--4074
46
2.4
46
98
0
211
35
10
7
46
1.67
3964--4110
67
2.2
67
80
13
160
34
12
8
44
1.72
4149--4271
22
5.6
22
69
11
81
35
17
11
34
1.86
4309--4492
22
8.3
22
80
10
99
37
18
10
33
1.86
4316--4426
46
2.5
44
79
10
109
37
17
11
33
1.86
4361--4490
44
3.0
42
80
9
145
33
16
13
36
1.88
4745--4809
30
2.1
31
91
2
105
46
4
20
29
1.70
13049--13424
63
6.0
63
93
0
644
31
16
22
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13049--13424
127
3.0
126
94
0
653
31
16
22
29
1.96
13049--13421
190
2.0
189
94
0
647
31
16
22
29
1.96
16906--16956
16
3.2
16
72
5
59
58
7
3
29
1.44
16888--16969
31
2.6
31
100
0
164
63
4
3
28
1.32
19274--19307
10
3.4
10
95
0
59
58
0
20
20
1.39
23573--23602
15
2.0
15
100
0
60
53
0
6
40
1.27
23831--23924
45
2.2
43
86
7
129
39
20
5
35
1.75
25801--25882
40
2.0
40
97
0
155
42
6
9
41
1.62
25865--25895
2
16.0
2
93
6
55
48
0
0
51
1.00
26669--26775
54
2.0
54
96
0
196
29
8
8
53
1.61
36027--36072
24
1.9
24
81
0
56
39
2
13
45
1.55
36866--36895
15
2.0
15
100
0
60
26
20
0
53
1.46
37877--37919
18
2.5
17
85
10
61
46
0
6
46
1.30
38396--38676
151
1.9
151
90
0
445
33
12
21
32
1.91

Tables:   1

The End!