Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007601.1 Corchorus capsularis cultivar CVL-1 contig07622, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68965

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
380--655
142
1.9
143
95
0
500
34
12
20
32
1.90
3203--3230
14
2.0
14
100
0
56
28
14
21
35
1.92
4447--4508
32
1.9
32
86
0
88
54
14
11
19
1.69
4758--4844
33
2.7
33
83
1
95
16
35
34
13
1.88
4929--5083
33
4.8
31
79
7
150
12
34
37
14
1.85
5118--5159
14
2.7
15
82
14
50
54
2
28
14
1.52
5416--5583
85
2.0
85
95
0
300
26
31
22
19
1.97
6007--6034
14
2.0
14
100
0
56
42
0
21
35
1.53
11367--11403
7
5.4
7
96
3
67
32
0
43
24
1.55
12824--13062
109
2.2
109
96
2
437
48
1
10
39
1.46
12836--13096
109
2.3
110
89
7
377
48
1
11
38
1.49
21219--21425
104
2.0
104
98
0
396
25
2
21
50
1.62
21997--22077
40
2.0
40
97
0
153
20
19
28
30
1.97
23688--23725
16
2.3
17
90
4
60
23
13
15
47
1.81
25688--25717
9
3.4
9
90
9
53
0
0
10
90
0.47
25688--25727
14
2.8
14
84
3
53
0
0
12
87
0.54
25688--25720
8
4.1
8
92
7
50
0
0
9
90
0.44
25873--26042
56
3.0
55
85
1
214
29
14
34
21
1.93
34091--34131
16
2.5
16
80
4
55
53
2
2
41
1.27
34263--34302
20
2.0
21
85
5
55
22
17
22
37
1.94
41380--41437
31
1.9
30
86
10
82
32
10
3
53
1.52
41761--41930
22
7.8
21
72
9
101
41
10
12
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41761--41930
44
3.9
44
77
7
168
41
10
12
35
1.77
42012--42239
22
10.6
22
71
11
116
41
8
14
35
1.76
42185--42235
23
2.2
23
92
0
84
39
3
15
41
1.66
42326--42421
22
4.3
22
74
13
72
34
12
14
38
1.84
42328--42421
45
2.1
44
82
5
109
35
12
14
37
1.85
42383--42440
22
2.6
22
86
10
75
36
13
12
37
1.82
42410--42480
22
3.2
22
77
15
67
43
11
12
32
1.78
43814--43842
12
2.4
12
100
0
58
31
0
31
37
1.58
47724--47762
12
3.2
12
85
0
51
5
20
0
74
1.01
49682--49781
22
4.6
22
79
6
105
42
15
7
36
1.74
49682--49802
22
5.6
21
74
13
93
42
14
6
36
1.71
49678--49781
43
2.4
44
83
4
131
41
14
7
36
1.75
49786--49879
20
4.5
21
74
16
72
28
14
7
48
1.71
51289--51329
22
1.9
21
85
5
55
17
41
7
34
1.77

Tables:   1

The End!