Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007603.1 Corchorus capsularis cultivar CVL-1 contig07624, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4555
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37


Found at i:1239 original size:16 final size:16

Alignment explanation


    Indices: 1215--1256  Score: 50
    Period size: 18  Copynumber: 2.5  Consensus size: 16

       1205 TATGCATTTT

                             
       1215 TTTTGTTTTA-GTTTAG
          1 TTTT-TTTTAGGTTTAG

                              
       1231 TTTTCTTTTAGTGTTTAG
          1 TTTT-TTTTAG-GTTTAG

                    
       1249 TTTTTTTT
          1 TTTTTTTT

       1257 TTCGTTTTTC


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  16    9  0.39
  17    4  0.17
  18   10  0.43

ACGTcount: A:0.10, C:0.02, G:0.14, T:0.74


Consensus pattern (16 bp):   
TTTTTTTTAGGTTTAG

Found at i:3974 original size:15 final size:15

Alignment explanation


    Indices: 3954--3983  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3944 ACAAAAAGAG

                           
       3954 TCATACGAAAGTTGT
          1 TCATACGAAAGTTGT

                    *      
       3969 TCATACGATAGTTGT
          1 TCATACGAAAGTTGT

       3984 CAATAATGAC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37


Consensus pattern (15 bp):   
TCATACGAAAGTTGT
Done.