Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007604.1 Corchorus capsularis cultivar CVL-1 contig07625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58217

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
509--578
30
2.4
30
80
2
88
35
27
11
25
1.90
11979--12009
5
6.0
5
96
3
53
19
0
3
77
0.90
13139--13211
36
2.2
34
85
11
98
21
12
0
65
1.25
14932--15005
29
2.5
30
86
6
116
36
18
27
17
1.94
14932--15008
28
2.7
29
89
4
120
38
18
25
16
1.92
16364--16408
23
2.0
23
95
0
81
13
11
24
51
1.73
19398--19431
11
3.2
10
84
15
50
50
17
2
29
1.61
29899--29931
2
16.5
2
100
0
66
48
0
0
51
1.00
38100--38363
107
2.5
107
90
1
406
39
7
10
42
1.67
41085--41142
28
2.0
29
83
3
73
12
20
31
36
1.89
41127--41162
18
2.0
18
88
0
54
16
11
22
50
1.77
46091--46163
32
2.3
31
81
11
85
28
6
13
50
1.67
46631--46679
6
8.2
6
77
8
55
79
2
16
2
0.92
47868--47906
20
2.0
20
89
0
60
5
17
2
74
1.12
47869--47916
13
3.7
13
80
5
53
4
16
2
77
1.03
48987--49197
112
1.9
112
95
0
386
45
12
3
38
1.59
50821--50862
20
2.1
20
100
0
84
40
9
4
45
1.58
53233--53262
13
2.3
13
100
0
60
46
6
26
20
1.75

Tables:   1

The End!