Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007607.1 Corchorus capsularis cultivar CVL-1 contig07628, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49297

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
272--299
14
2.0
14
100
0
56
42
7
7
42
1.59
6552--6583
16
1.9
17
93
6
57
81
0
18
0
0.70
10453--10494
2
21.0
2
95
0
75
50
2
0
47
1.14
10870--10896
13
2.1
13
100
0
54
48
7
14
29
1.71
12613--12661
17
2.9
16
82
14
55
22
18
22
36
1.95
15291--15484
99
2.0
99
85
2
264
18
19
27
35
1.95
22084--22136
21
2.5
21
71
0
52
50
0
1
47
1.12
32656--32810
70
2.2
70
88
4
224
50
1
12
35
1.49
35251--35349
22
4.3
22
69
16
67
39
5
11
44
1.62
35338--35615
22
12.5
22
73
8
170
39
8
15
35
1.79
35364--35417
27
2.0
27
92
0
90
48
3
14
33
1.62
35345--35439
49
2.0
48
87
2
136
43
6
15
34
1.73
35742--35786
22
2.0
22
100
0
90
35
8
13
42
1.75
35733--35840
58
1.9
56
83
7
137
35
9
21
34
1.85
35844--35920
22
3.5
22
75
1
75
40
6
16
36
1.75
35844--35940
44
2.2
44
81
5
108
38
6
16
39
1.74
43646--44311
169
3.9
166
75
11
474
39
15
12
33
1.84
44456--44585
68
1.9
68
98
0
251
39
11
9
40
1.74
44963--45017
27
2.0
27
96
0
101
27
29
5
38
1.79
47415--47467
2
26.5
2
92
0
88
47
0
52
0
1.00

Tables:   1

The End!